JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CHRAC1_chr8_140506322_140522154	0/0	t0009	2085	4	3	1	0	0	0	copy fasta	CHRAC1	chr8	140506322	140522154
CHRAC1_chr8_140506322_140522154	0/0	t0010	2085	3	0	0	1	0	2	copy fasta	CHRAC1	chr8	140506322	140522154
CHRAC1_chr8_140506322_140522154	0/0	t0011	2084	3	0	0	3	0	0	copy fasta	CHRAC1	chr8	140506322	140522154
CHRAC1_chr8_140506322_140522154	0/0	t0012	2084	1	1	0	0	0	0	copy fasta	CHRAC1	chr8	140506322	140522154
CHRAC1_chr8_140506322_140522154	0/0	t0013	2084	1	0	1	0	0	0	copy fasta	CHRAC1	chr8	140506322	140522154
CHRAC1_chr8_140506322_140522154	0/0	t0014	2085	1	1	0	0	0	0	copy fasta	CHRAC1	chr8	140506322	140522154
CHRAC1_chr8_140506322_140522154	0/0	t0015	2082	1	0	0	1	0	0	copy fasta	CHRAC1	chr8	140506322	140522154
CHRAC1_chr8_140506322_140522154	0/0	t0016	2085	1	0	1	0	0	0	copy fasta	CHRAC1	chr8	140506322	140522154
CHRAC1_chr8_140506322_140522154	0/0	t0017	2083	1	1	0	0	0	0	copy fasta	CHRAC1	chr8	140506322	140522154
CHRAC1_chr8_140506322_140522154	0/0	t0018	2084	1	1	0	0	0	0	copy fasta	CHRAC1	chr8	140506322	140522154
CHRAC1_chr8_140506322_140522154	0/0	t0019	2084	1	0	0	1	0	0	copy fasta	CHRAC1	chr8	140506322	140522154
CHRAC1_chr8_140506322_140522154	0/0	t0020	2085	1	1	0	0	0	0	copy fasta	CHRAC1	chr8	140506322	140522154
CHRAC1_chr8_140506322_140522154	0/0	t0021	2083	1	0	0	1	0	0	copy fasta	CHRAC1	chr8	140506322	140522154
CHRAC1_chr8_140506322_140522154	0/0	t0022	2084	1	0	0	1	0	0	copy fasta	CHRAC1	chr8	140506322	140522154
CHRAC1_chr8_140506322_140522154	0/0	t0023	2084	1	0	0	0	0	1	copy fasta	CHRAC1	chr8	140506322	140522154
CHRAC1_chr8_140506322_140522154	0/0	t0024	2084	1	1	0	0	0	0	copy fasta	CHRAC1	chr8	140506322	140522154
CHRAC1_chr8_140506322_140522154	0/0	t0025	2086	1	1	0	0	0	0	copy fasta	CHRAC1	chr8	140506322	140522154
CHRAC1_chr8_140506322_140522154	0/0	t0026	2086	1	1	0	0	0	0	copy fasta	CHRAC1	chr8	140506322	140522154
CHRAC1_chr8_140506322_140522154	0/0	t0027	2085	1	0	0	0	0	1	copy fasta	CHRAC1	chr8	140506322	140522154
CHRAC1_chr8_140506322_140522154	0/0	t0028	2086	1	0	0	0	0	1	copy fasta	CHRAC1	chr8	140506322	140522154
CHRAC1_chr8_140506322_140522154	0/0	t0029	2086	1	0	0	0	0	1	copy fasta	CHRAC1	chr8	140506322	140522154
CHRAC1_chr8_140506322_140522154	0/0	t0030	2086	1	0	1	0	0	0	copy fasta	CHRAC1	chr8	140506322	140522154
CHRAC1_chr8_140506322_140522154	0/0	t0031	2085	1	1	0	0	0	0	copy fasta	CHRAC1	chr8	140506322	140522154
CHRDL1_chrX_110668856_110800817	0/0	t0001	2482	32	0	5	21	2	4	copy fasta	CHRDL1	chrX	110668856	110800817
CHRDL1_chrX_110668856_110800817	1/0	t0002	2484	17	0	2	10	0	4	copy fasta	CHRDL1	chrX	110668856	110800817
CHRDL1_chrX_110668856_110800817	0/0	t0003	2480	15	14	0	0	1	0	copy fasta	CHRDL1	chrX	110668856	110800817
CHRDL1_chrX_110668856_110800817	0/0	t0004	2482	14	8	4	0	1	1	copy fasta	CHRDL1	chrX	110668856	110800817
CHRDL1_chrX_110668856_110800817	0/0	t0005	2486	13	1	3	7	0	2	copy fasta	CHRDL1	chrX	110668856	110800817
CHRDL1_chrX_110668856_110800817	0/0	t0006	2478	8	7	0	0	1	0	copy fasta	CHRDL1	chrX	110668856	110800817
CHRDL1_chrX_110668856_110800817	0/0	t0007	2486	5	3	0	1	1	0	copy fasta	CHRDL1	chrX	110668856	110800817
CHRDL1_chrX_110668856_110800817	0/0	t0008	2488	4	4	0	0	0	0	copy fasta	CHRDL1	chrX	110668856	110800817
CHRDL1_chrX_110668856_110800817	0/0	t0009	2474	4	0	0	4	0	0	copy fasta	CHRDL1	chrX	110668856	110800817
CHRDL1_chrX_110668856_110800817	0/0	t0010	2488	4	0	2	0	0	2	copy fasta	CHRDL1	chrX	110668856	110800817
CHRDL1_chrX_110668856_110800817	0/0	t0011	2476	4	4	0	0	0	0	copy fasta	CHRDL1	chrX	110668856	110800817
CHRDL1_chrX_110668856_110800817	0/0	t0012	2490	3	2	1	0	0	0	copy fasta	CHRDL1	chrX	110668856	110800817
CHRDL1_chrX_110668856_110800817	0/0	t0013	2483	3	0	1	2	0	0	copy fasta	CHRDL1	chrX	110668856	110800817
CHRDL1_chrX_110668856_110800817	0/0	t0014	2478	3	0	2	1	0	0	copy fasta	CHRDL1	chrX	110668856	110800817
CHRDL1_chrX_110668856_110800817	0/0	t0015	2480	3	0	0	3	0	0	copy fasta	CHRDL1	chrX	110668856	110800817
CHRDL1_chrX_110668856_110800817	0/0	t0016	2474	2	0	0	2	0	0	copy fasta	CHRDL1	chrX	110668856	110800817
CHRDL1_chrX_110668856_110800817	0/0	t0017	2481	2	0	0	2	0	0	copy fasta	CHRDL1	chrX	110668856	110800817
CHRDL1_chrX_110668856_110800817	0/0	t0018	2482	2	0	0	0	0	2	copy fasta	CHRDL1	chrX	110668856	110800817
CHRDL1_chrX_110668856_110800817	0/1	t0019	2482	2	1	0	0	0	0	copy fasta	CHRDL1	chrX	110668856	110800817
CHRDL1_chrX_110668856_110800817	0/0	t0020	2494	2	2	0	0	0	0	copy fasta	CHRDL1	chrX	110668856	110800817
CHRDL1_chrX_110668856_110800817	0/0	t0021	2482	1	1	0	0	0	0	copy fasta	CHRDL1	chrX	110668856	110800817
CHRDL1_chrX_110668856_110800817	0/0	t0022	2490	1	1	0	0	0	0	copy fasta	CHRDL1	chrX	110668856	110800817
CHRDL1_chrX_110668856_110800817	0/0	t0023	2486	1	0	1	0	0	0	copy fasta	CHRDL1	chrX	110668856	110800817
CHRDL1_chrX_110668856_110800817	0/0	t0024	2484	1	0	0	0	1	0	copy fasta	CHRDL1	chrX	110668856	110800817
CHRDL1_chrX_110668856_110800817	0/0	t0025	2490	1	0	0	1	0	0	copy fasta	CHRDL1	chrX	110668856	110800817
CHRDL1_chrX_110668856_110800817	0/0	t0026	2483	1	0	0	1	0	0	copy fasta	CHRDL1	chrX	110668856	110800817
CHRDL1_chrX_110668856_110800817	0/0	t0027	2479	1	0	0	1	0	0	copy fasta	CHRDL1	chrX	110668856	110800817