JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CHRDL1_chrX_110668856_110800817	0/0	t0028	2481	1	0	0	1	0	0	copy fasta	CHRDL1	chrX	110668856	110800817
CHRDL1_chrX_110668856_110800817	0/0	t0029	2485	1	0	1	0	0	0	copy fasta	CHRDL1	chrX	110668856	110800817
CHRDL1_chrX_110668856_110800817	0/0	t0030	2487	1	0	0	1	0	0	copy fasta	CHRDL1	chrX	110668856	110800817
CHRDL1_chrX_110668856_110800817	0/0	t0031	2490	1	0	0	1	0	0	copy fasta	CHRDL1	chrX	110668856	110800817
CHRDL1_chrX_110668856_110800817	0/0	t0032	2483	1	0	0	1	0	0	copy fasta	CHRDL1	chrX	110668856	110800817
CHRDL1_chrX_110668856_110800817	0/0	t0033	2490	1	0	1	0	0	0	copy fasta	CHRDL1	chrX	110668856	110800817
CHRDL1_chrX_110668856_110800817	0/0	t0034	2489	1	0	0	1	0	0	copy fasta	CHRDL1	chrX	110668856	110800817
CHRDL1_chrX_110668856_110800817	0/0	t0035	2506	1	0	0	0	0	1	copy fasta	CHRDL1	chrX	110668856	110800817
CHRDL1_chrX_110668856_110800817	0/0	t0036	2508	1	1	0	0	0	0	copy fasta	CHRDL1	chrX	110668856	110800817
CHRDL1_chrX_110668856_110800817	0/0	t0037	2488	1	0	0	1	0	0	copy fasta	CHRDL1	chrX	110668856	110800817
CHRDL1_chrX_110668856_110800817	0/0	t0038	2479	1	0	0	1	0	0	copy fasta	CHRDL1	chrX	110668856	110800817
CHRDL1_chrX_110668856_110800817	0/0	t0039	2476	1	0	0	1	0	0	copy fasta	CHRDL1	chrX	110668856	110800817
CHRDL1_chrX_110668856_110800817	0/0	t0040	2482	1	0	1	0	0	0	copy fasta	CHRDL1	chrX	110668856	110800817
CHRDL1_chrX_110668856_110800817	0/0	t0041	2481	1	1	0	0	0	0	copy fasta	CHRDL1	chrX	110668856	110800817
CHRDL1_chrX_110668856_110800817	0/0	t0042	2476	1	0	0	1	0	0	copy fasta	CHRDL1	chrX	110668856	110800817
CHRDL1_chrX_110668856_110800817	0/0	t0043	2484	1	1	0	0	0	0	copy fasta	CHRDL1	chrX	110668856	110800817
CHRDL1_chrX_110668856_110800817	0/0	t0044	2490	1	1	0	0	0	0	copy fasta	CHRDL1	chrX	110668856	110800817
CHRDL1_chrX_110668856_110800817	0/0	t0045	2492	1	1	0	0	0	0	copy fasta	CHRDL1	chrX	110668856	110800817
CHRDL1_chrX_110668856_110800817	0/0	t0046	2482	1	1	0	0	0	0	copy fasta	CHRDL1	chrX	110668856	110800817
CHRDL1_chrX_110668856_110800817	0/0	t0047	2480	1	1	0	0	0	0	copy fasta	CHRDL1	chrX	110668856	110800817
CHRDL1_chrX_110668856_110800817	0/0	t0048	2484	1	1	0	0	0	0	copy fasta	CHRDL1	chrX	110668856	110800817
CHRDL1_chrX_110668856_110800817	0/0	t0049	2478	1	1	0	0	0	0	copy fasta	CHRDL1	chrX	110668856	110800817
CHRDL1_chrX_110668856_110800817	0/0	t0050	2482	1	1	0	0	0	0	copy fasta	CHRDL1	chrX	110668856	110800817
CHRDL2_chr11_74691429_74736426	1/0	t0001	619	228	67	29	79	10	42	copy fasta	CHRDL2	chr11	74691429	74736426
CHRDL2_chr11_74691429_74736426	0/1	t0002	619	123	7	23	83	3	6	copy fasta	CHRDL2	chr11	74691429	74736426
CHRDL2_chr11_74691429_74736426	0/0	t0003	619	12	4	6	0	1	1	copy fasta	CHRDL2	chr11	74691429	74736426
CHRDL2_chr11_74691429_74736426	0/0	t0004	619	9	9	0	0	0	0	copy fasta	CHRDL2	chr11	74691429	74736426
CHRDL2_chr11_74691429_74736426	0/0	t0005	619	9	9	0	0	0	0	copy fasta	CHRDL2	chr11	74691429	74736426
CHRDL2_chr11_74691429_74736426	0/0	t0006	619	8	0	0	7	0	1	copy fasta	CHRDL2	chr11	74691429	74736426
CHRDL2_chr11_74691429_74736426	0/0	t0007	619	1	1	0	0	0	0	copy fasta	CHRDL2	chr11	74691429	74736426
CHRDL2_chr11_74691429_74736426	0/0	t0008	645	1	1	0	0	0	0	copy fasta	CHRDL2	chr11	74691429	74736426
CHRDL2_chr11_74691429_74736426	0/0	t0009	619	1	0	0	1	0	0	copy fasta	CHRDL2	chr11	74691429	74736426
CHRD_chr3_184375054_184394829	1/1	t0001	673	418	98	83	175	16	44	copy fasta	CHRD	chr3	184375054	184394829
CHRD_chr3_184375054_184394829	0/0	t0002	679	5	0	0	4	0	1	copy fasta	CHRD	chr3	184375054	184394829
CHRD_chr3_184375054_184394829	0/0	t0003	673	1	1	0	0	0	0	copy fasta	CHRD	chr3	184375054	184394829
CHRD_chr3_184375054_184394829	0/0	t0004	673	1	0	0	0	0	1	copy fasta	CHRD	chr3	184375054	184394829
CHRD_chr3_184375054_184394829	0/0	t0005	685	1	1	0	0	0	0	copy fasta	CHRD	chr3	184375054	184394829
CHRD_chr3_184375054_184394829	0/0	t0006	642	1	0	0	1	0	0	copy fasta	CHRD	chr3	184375054	184394829
CHRD_chr3_184375054_184394829	0/0	t0007	673	1	0	1	0	0	0	copy fasta	CHRD	chr3	184375054	184394829
CHRFAM7A_chr15_30355566_30398540	0/0	t0001	2172	42	5	9	21	1	6	copy fasta	CHRFAM7A	chr15	30355566	30398540
CHRFAM7A_chr15_30355566_30398540	0/0	t0002	2174	9	0	5	0	2	2	copy fasta	CHRFAM7A	chr15	30355566	30398540
CHRFAM7A_chr15_30355566_30398540	0/0	t0003	2173	9	0	5	4	0	0	copy fasta	CHRFAM7A	chr15	30355566	30398540
CHRFAM7A_chr15_30355566_30398540	0/0	t0004	2173	8	4	1	2	0	1	copy fasta	CHRFAM7A	chr15	30355566	30398540
CHRFAM7A_chr15_30355566_30398540	0/0	t0005	2173	7	6	1	0	0	0	copy fasta	CHRFAM7A	chr15	30355566	30398540
CHRFAM7A_chr15_30355566_30398540	0/0	t0006	2172	6	1	2	0	1	2	copy fasta	CHRFAM7A	chr15	30355566	30398540
CHRFAM7A_chr15_30355566_30398540	0/0	t0007	2173	5	0	3	0	0	2	copy fasta	CHRFAM7A	chr15	30355566	30398540
CHRFAM7A_chr15_30355566_30398540	0/0	t0008	2172	5	1	0	1	1	2	copy fasta	CHRFAM7A	chr15	30355566	30398540
CHRFAM7A_chr15_30355566_30398540	0/0	t0009	2171	5	5	0	0	0	0	copy fasta	CHRFAM7A	chr15	30355566	30398540
CHRFAM7A_chr15_30355566_30398540	0/1	t0010	2170	5	2	0	0	0	2	copy fasta	CHRFAM7A	chr15	30355566	30398540
CHRFAM7A_chr15_30355566_30398540	0/0	t0011	2172	3	0	1	2	0	0	copy fasta	CHRFAM7A	chr15	30355566	30398540