JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CHRFAM7A_chr15_30355566_30398540	0/0	t0012	2172	2	2	0	0	0	0	copy fasta	CHRFAM7A	chr15	30355566	30398540
CHRFAM7A_chr15_30355566_30398540	0/0	t0013	2174	2	1	1	0	0	0	copy fasta	CHRFAM7A	chr15	30355566	30398540
CHRFAM7A_chr15_30355566_30398540	0/0	t0014	2172	2	0	0	2	0	0	copy fasta	CHRFAM7A	chr15	30355566	30398540
CHRFAM7A_chr15_30355566_30398540	0/0	t0015	2172	2	0	0	2	0	0	copy fasta	CHRFAM7A	chr15	30355566	30398540
CHRFAM7A_chr15_30355566_30398540	0/0	t0016	2173	2	0	0	2	0	0	copy fasta	CHRFAM7A	chr15	30355566	30398540
CHRFAM7A_chr15_30355566_30398540	0/0	t0017	2171	2	2	0	0	0	0	copy fasta	CHRFAM7A	chr15	30355566	30398540
CHRFAM7A_chr15_30355566_30398540	0/0	t0018	2170	2	0	0	2	0	0	copy fasta	CHRFAM7A	chr15	30355566	30398540
CHRFAM7A_chr15_30355566_30398540	0/0	t0019	2174	1	0	0	0	0	1	copy fasta	CHRFAM7A	chr15	30355566	30398540
CHRFAM7A_chr15_30355566_30398540	0/0	t0020	2173	1	1	0	0	0	0	copy fasta	CHRFAM7A	chr15	30355566	30398540
CHRFAM7A_chr15_30355566_30398540	0/0	t0021	2173	1	1	0	0	0	0	copy fasta	CHRFAM7A	chr15	30355566	30398540
CHRFAM7A_chr15_30355566_30398540	0/0	t0022	2173	1	0	0	0	1	0	copy fasta	CHRFAM7A	chr15	30355566	30398540
CHRFAM7A_chr15_30355566_30398540	0/0	t0023	2172	1	0	0	0	0	1	copy fasta	CHRFAM7A	chr15	30355566	30398540
CHRFAM7A_chr15_30355566_30398540	0/0	t0024	2173	1	0	0	0	0	1	copy fasta	CHRFAM7A	chr15	30355566	30398540
CHRFAM7A_chr15_30355566_30398540	0/0	t0025	2173	1	0	0	0	0	1	copy fasta	CHRFAM7A	chr15	30355566	30398540
CHRFAM7A_chr15_30355566_30398540	0/0	t0026	2172	1	0	1	0	0	0	copy fasta	CHRFAM7A	chr15	30355566	30398540
CHRFAM7A_chr15_30355566_30398540	0/0	t0027	2172	1	1	0	0	0	0	copy fasta	CHRFAM7A	chr15	30355566	30398540
CHRFAM7A_chr15_30355566_30398540	0/0	t0028	2172	1	0	0	0	0	1	copy fasta	CHRFAM7A	chr15	30355566	30398540
CHRFAM7A_chr15_30355566_30398540	0/0	t0029	2171	1	1	0	0	0	0	copy fasta	CHRFAM7A	chr15	30355566	30398540
CHRFAM7A_chr15_30355566_30398540	0/0	t0030	2172	1	1	0	0	0	0	copy fasta	CHRFAM7A	chr15	30355566	30398540
CHRFAM7A_chr15_30355566_30398540	0/0	t0031	2171	1	1	0	0	0	0	copy fasta	CHRFAM7A	chr15	30355566	30398540
CHRFAM7A_chr15_30355566_30398540	0/0	t0032	2170	1	1	0	0	0	0	copy fasta	CHRFAM7A	chr15	30355566	30398540
CHRFAM7A_chr15_30355566_30398540	0/0	t0033	2172	1	0	1	0	0	0	copy fasta	CHRFAM7A	chr15	30355566	30398540
CHRM1_chr11_62903679_62926363	1/1	t0001	1264	378	59	72	194	15	36	copy fasta	CHRM1	chr11	62903679	62926363
CHRM1_chr11_62903679_62926363	0/0	t0002	1264	12	11	1	0	0	0	copy fasta	CHRM1	chr11	62903679	62926363
CHRM1_chr11_62903679_62926363	0/0	t0003	1264	10	10	0	0	0	0	copy fasta	CHRM1	chr11	62903679	62926363
CHRM1_chr11_62903679_62926363	0/0	t0004	1264	5	5	0	0	0	0	copy fasta	CHRM1	chr11	62903679	62926363
CHRM1_chr11_62903679_62926363	0/0	t0005	1264	4	0	1	1	0	2	copy fasta	CHRM1	chr11	62903679	62926363
CHRM1_chr11_62903679_62926363	0/0	t0006	1264	2	0	0	2	0	0	copy fasta	CHRM1	chr11	62903679	62926363
CHRM1_chr11_62903679_62926363	0/0	t0007	1264	2	0	0	2	0	0	copy fasta	CHRM1	chr11	62903679	62926363
CHRM1_chr11_62903679_62926363	0/0	t0008	1264	1	0	0	1	0	0	copy fasta	CHRM1	chr11	62903679	62926363
CHRM1_chr11_62903679_62926363	0/0	t0009	1264	1	1	0	0	0	0	copy fasta	CHRM1	chr11	62903679	62926363
CHRM1_chr11_62903679_62926363	0/0	t0010	1264	1	0	0	1	0	0	copy fasta	CHRM1	chr11	62903679	62926363
CHRM1_chr11_62903679_62926363	0/0	t0011	1264	1	0	0	1	0	0	copy fasta	CHRM1	chr11	62903679	62926363
CHRM1_chr11_62903679_62926363	0/0	t0012	1264	1	1	0	0	0	0	copy fasta	CHRM1	chr11	62903679	62926363
CHRM1_chr11_62903679_62926363	0/0	t0013	1264	1	1	0	0	0	0	copy fasta	CHRM1	chr11	62903679	62926363
CHRM1_chr11_62903679_62926363	0/0	t0014	1264	1	0	0	0	1	0	copy fasta	CHRM1	chr11	62903679	62926363
CHRM2_chr7_136863652_137025213	0/0	t0001	4569	58	4	6	40	2	6	copy fasta	CHRM2	chr7	136863652	137025213
CHRM2_chr7_136863652_137025213	0/0	t0002	4569	38	1	12	22	1	2	copy fasta	CHRM2	chr7	136863652	137025213
CHRM2_chr7_136863652_137025213	0/0	t0003	4571	19	0	2	16	0	1	copy fasta	CHRM2	chr7	136863652	137025213
CHRM2_chr7_136863652_137025213	1/1	t0004	4571	18	2	6	4	0	4	copy fasta	CHRM2	chr7	136863652	137025213
CHRM2_chr7_136863652_137025213	0/0	t0005	4570	18	3	1	11	1	2	copy fasta	CHRM2	chr7	136863652	137025213
CHRM2_chr7_136863652_137025213	0/0	t0006	4571	14	0	1	8	0	5	copy fasta	CHRM2	chr7	136863652	137025213
CHRM2_chr7_136863652_137025213	0/0	t0007	4571	12	3	7	0	0	2	copy fasta	CHRM2	chr7	136863652	137025213
CHRM2_chr7_136863652_137025213	0/0	t0008	4573	11	2	6	0	1	2	copy fasta	CHRM2	chr7	136863652	137025213
CHRM2_chr7_136863652_137025213	0/0	t0009	4570	7	6	1	0	0	0	copy fasta	CHRM2	chr7	136863652	137025213
CHRM2_chr7_136863652_137025213	0/0	t0010	4571	6	0	3	3	0	0	copy fasta	CHRM2	chr7	136863652	137025213
CHRM2_chr7_136863652_137025213	0/0	t0011	4572	5	4	1	0	0	0	copy fasta	CHRM2	chr7	136863652	137025213
CHRM2_chr7_136863652_137025213	0/0	t0012	4555	5	0	4	0	0	1	copy fasta	CHRM2	chr7	136863652	137025213
CHRM2_chr7_136863652_137025213	0/0	t0013	4571	4	4	0	0	0	0	copy fasta	CHRM2	chr7	136863652	137025213
CHRM2_chr7_136863652_137025213	0/0	t0014	4572	4	3	0	0	0	1	copy fasta	CHRM2	chr7	136863652	137025213