JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CHRM2_chr7_136863652_137025213	0/0	t0015	4574	3	3	0	0	0	0	copy fasta	CHRM2	chr7	136863652	137025213
CHRM2_chr7_136863652_137025213	0/0	t0016	4571	3	3	0	0	0	0	copy fasta	CHRM2	chr7	136863652	137025213
CHRM2_chr7_136863652_137025213	0/0	t0017	4572	3	0	0	3	0	0	copy fasta	CHRM2	chr7	136863652	137025213
CHRM2_chr7_136863652_137025213	0/0	t0018	4569	3	3	0	0	0	0	copy fasta	CHRM2	chr7	136863652	137025213
CHRM2_chr7_136863652_137025213	0/0	t0019	4569	3	0	0	3	0	0	copy fasta	CHRM2	chr7	136863652	137025213
CHRM2_chr7_136863652_137025213	0/0	t0020	4565	3	1	2	0	0	0	copy fasta	CHRM2	chr7	136863652	137025213
CHRM2_chr7_136863652_137025213	0/0	t0021	4573	2	2	0	0	0	0	copy fasta	CHRM2	chr7	136863652	137025213
CHRM2_chr7_136863652_137025213	0/0	t0022	4573	2	0	0	0	0	2	copy fasta	CHRM2	chr7	136863652	137025213
CHRM2_chr7_136863652_137025213	0/0	t0023	4571	2	1	1	0	0	0	copy fasta	CHRM2	chr7	136863652	137025213
CHRM2_chr7_136863652_137025213	0/0	t0024	4571	2	2	0	0	0	0	copy fasta	CHRM2	chr7	136863652	137025213
CHRM2_chr7_136863652_137025213	0/0	t0025	4571	2	2	0	0	0	0	copy fasta	CHRM2	chr7	136863652	137025213
CHRM2_chr7_136863652_137025213	0/0	t0026	4570	2	0	0	0	0	2	copy fasta	CHRM2	chr7	136863652	137025213
CHRM2_chr7_136863652_137025213	0/0	t0027	4569	2	0	0	0	0	2	copy fasta	CHRM2	chr7	136863652	137025213
CHRM2_chr7_136863652_137025213	0/0	t0028	4569	2	2	0	0	0	0	copy fasta	CHRM2	chr7	136863652	137025213
CHRM2_chr7_136863652_137025213	0/0	t0029	4569	2	0	0	2	0	0	copy fasta	CHRM2	chr7	136863652	137025213
CHRM2_chr7_136863652_137025213	0/0	t0030	4571	2	0	0	0	0	2	copy fasta	CHRM2	chr7	136863652	137025213
CHRM2_chr7_136863652_137025213	0/0	t0031	4565	2	2	0	0	0	0	copy fasta	CHRM2	chr7	136863652	137025213
CHRM2_chr7_136863652_137025213	0/0	t0032	4566	2	2	0	0	0	0	copy fasta	CHRM2	chr7	136863652	137025213
CHRM2_chr7_136863652_137025213	0/0	t0033	4565	2	2	0	0	0	0	copy fasta	CHRM2	chr7	136863652	137025213
CHRM2_chr7_136863652_137025213	0/0	t0034	4565	2	0	2	0	0	0	copy fasta	CHRM2	chr7	136863652	137025213
CHRM2_chr7_136863652_137025213	0/0	t0035	4566	2	2	0	0	0	0	copy fasta	CHRM2	chr7	136863652	137025213
CHRM2_chr7_136863652_137025213	0/0	t0036	4557	2	0	0	0	1	1	copy fasta	CHRM2	chr7	136863652	137025213
CHRM2_chr7_136863652_137025213	0/0	t0037	4555	2	0	0	0	0	2	copy fasta	CHRM2	chr7	136863652	137025213
CHRM2_chr7_136863652_137025213	0/0	t0038	4573	1	1	0	0	0	0	copy fasta	CHRM2	chr7	136863652	137025213
CHRM2_chr7_136863652_137025213	0/0	t0039	4573	1	1	0	0	0	0	copy fasta	CHRM2	chr7	136863652	137025213
CHRM2_chr7_136863652_137025213	0/0	t0040	4573	1	1	0	0	0	0	copy fasta	CHRM2	chr7	136863652	137025213
CHRM2_chr7_136863652_137025213	0/0	t0041	4573	1	0	0	0	0	1	copy fasta	CHRM2	chr7	136863652	137025213
CHRM2_chr7_136863652_137025213	0/0	t0042	4573	1	0	0	1	0	0	copy fasta	CHRM2	chr7	136863652	137025213
CHRM2_chr7_136863652_137025213	0/0	t0043	4571	1	0	1	0	0	0	copy fasta	CHRM2	chr7	136863652	137025213
CHRM2_chr7_136863652_137025213	0/0	t0044	4572	1	1	0	0	0	0	copy fasta	CHRM2	chr7	136863652	137025213
CHRM2_chr7_136863652_137025213	0/0	t0045	4571	1	0	0	0	0	1	copy fasta	CHRM2	chr7	136863652	137025213
CHRM2_chr7_136863652_137025213	0/0	t0046	4571	1	1	0	0	0	0	copy fasta	CHRM2	chr7	136863652	137025213
CHRM2_chr7_136863652_137025213	0/0	t0047	4571	1	1	0	0	0	0	copy fasta	CHRM2	chr7	136863652	137025213
CHRM2_chr7_136863652_137025213	0/0	t0048	4572	1	1	0	0	0	0	copy fasta	CHRM2	chr7	136863652	137025213
CHRM2_chr7_136863652_137025213	0/0	t0049	4571	1	1	0	0	0	0	copy fasta	CHRM2	chr7	136863652	137025213
CHRM2_chr7_136863652_137025213	0/0	t0050	4572	1	0	0	1	0	0	copy fasta	CHRM2	chr7	136863652	137025213
CHRM2_chr7_136863652_137025213	0/0	t0051	4571	1	1	0	0	0	0	copy fasta	CHRM2	chr7	136863652	137025213
CHRM2_chr7_136863652_137025213	0/0	t0052	4571	1	0	0	1	0	0	copy fasta	CHRM2	chr7	136863652	137025213
CHRM2_chr7_136863652_137025213	0/0	t0053	4572	1	1	0	0	0	0	copy fasta	CHRM2	chr7	136863652	137025213
CHRM2_chr7_136863652_137025213	0/0	t0054	4571	1	1	0	0	0	0	copy fasta	CHRM2	chr7	136863652	137025213
CHRM2_chr7_136863652_137025213	0/0	t0055	4571	1	1	0	0	0	0	copy fasta	CHRM2	chr7	136863652	137025213
CHRM2_chr7_136863652_137025213	0/0	t0056	4571	1	0	0	0	0	1	copy fasta	CHRM2	chr7	136863652	137025213
CHRM2_chr7_136863652_137025213	0/0	t0057	4571	1	1	0	0	0	0	copy fasta	CHRM2	chr7	136863652	137025213
CHRM2_chr7_136863652_137025213	0/0	t0058	4572	1	0	0	1	0	0	copy fasta	CHRM2	chr7	136863652	137025213
CHRM2_chr7_136863652_137025213	0/0	t0059	4571	1	0	0	1	0	0	copy fasta	CHRM2	chr7	136863652	137025213
CHRM2_chr7_136863652_137025213	0/0	t0060	4569	1	0	0	0	0	1	copy fasta	CHRM2	chr7	136863652	137025213
CHRM2_chr7_136863652_137025213	0/0	t0061	4571	1	1	0	0	0	0	copy fasta	CHRM2	chr7	136863652	137025213
CHRM2_chr7_136863652_137025213	0/0	t0062	4569	1	0	1	0	0	0	copy fasta	CHRM2	chr7	136863652	137025213
CHRM2_chr7_136863652_137025213	0/0	t0063	4570	1	0	0	0	0	1	copy fasta	CHRM2	chr7	136863652	137025213
CHRM2_chr7_136863652_137025213	0/0	t0064	4569	1	0	0	0	1	0	copy fasta	CHRM2	chr7	136863652	137025213