JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CHRM2_chr7_136863652_137025213	0/0	t0065	4569	1	0	0	1	0	0	copy fasta	CHRM2	chr7	136863652	137025213
CHRM2_chr7_136863652_137025213	0/0	t0066	4571	1	0	0	0	0	1	copy fasta	CHRM2	chr7	136863652	137025213
CHRM2_chr7_136863652_137025213	0/0	t0067	4570	1	0	0	1	0	0	copy fasta	CHRM2	chr7	136863652	137025213
CHRM2_chr7_136863652_137025213	0/0	t0068	4569	1	0	0	1	0	0	copy fasta	CHRM2	chr7	136863652	137025213
CHRM2_chr7_136863652_137025213	0/0	t0069	4569	1	0	0	1	0	0	copy fasta	CHRM2	chr7	136863652	137025213
CHRM2_chr7_136863652_137025213	0/0	t0070	4569	1	0	0	1	0	0	copy fasta	CHRM2	chr7	136863652	137025213
CHRM2_chr7_136863652_137025213	0/0	t0071	4570	1	1	0	0	0	0	copy fasta	CHRM2	chr7	136863652	137025213
CHRM2_chr7_136863652_137025213	0/0	t0072	4569	1	0	0	0	0	1	copy fasta	CHRM2	chr7	136863652	137025213
CHRM2_chr7_136863652_137025213	0/0	t0073	4566	1	1	0	0	0	0	copy fasta	CHRM2	chr7	136863652	137025213
CHRM2_chr7_136863652_137025213	0/0	t0074	4566	1	1	0	0	0	0	copy fasta	CHRM2	chr7	136863652	137025213
CHRM2_chr7_136863652_137025213	0/0	t0075	4566	1	1	0	0	0	0	copy fasta	CHRM2	chr7	136863652	137025213
CHRM2_chr7_136863652_137025213	0/0	t0076	4565	1	0	1	0	0	0	copy fasta	CHRM2	chr7	136863652	137025213
CHRM2_chr7_136863652_137025213	0/0	t0077	4565	1	1	0	0	0	0	copy fasta	CHRM2	chr7	136863652	137025213
CHRM2_chr7_136863652_137025213	0/0	t0078	4566	1	1	0	0	0	0	copy fasta	CHRM2	chr7	136863652	137025213
CHRM2_chr7_136863652_137025213	0/0	t0079	4565	1	0	1	0	0	0	copy fasta	CHRM2	chr7	136863652	137025213
CHRM2_chr7_136863652_137025213	0/0	t0080	4566	1	1	0	0	0	0	copy fasta	CHRM2	chr7	136863652	137025213
CHRM2_chr7_136863652_137025213	0/0	t0081	4565	1	0	1	0	0	0	copy fasta	CHRM2	chr7	136863652	137025213
CHRM2_chr7_136863652_137025213	0/0	t0082	4565	1	0	0	1	0	0	copy fasta	CHRM2	chr7	136863652	137025213
CHRM2_chr7_136863652_137025213	0/0	t0083	4566	1	1	0	0	0	0	copy fasta	CHRM2	chr7	136863652	137025213
CHRM2_chr7_136863652_137025213	0/0	t0084	4571	1	0	0	1	0	0	copy fasta	CHRM2	chr7	136863652	137025213
CHRM2_chr7_136863652_137025213	0/0	t0085	4555	1	1	0	0	0	0	copy fasta	CHRM2	chr7	136863652	137025213
CHRM2_chr7_136863652_137025213	0/0	t0086	4555	1	0	0	0	1	0	copy fasta	CHRM2	chr7	136863652	137025213
CHRM3_chr1_239381568_239920450	0/0	t0001	7407	13	1	1	7	2	2	copy fasta	CHRM3	chr1	239381568	239920450
CHRM3_chr1_239381568_239920450	0/0	t0002	7409	10	0	5	4	0	1	copy fasta	CHRM3	chr1	239381568	239920450
CHRM3_chr1_239381568_239920450	0/0	t0003	7410	6	2	3	0	0	1	copy fasta	CHRM3	chr1	239381568	239920450
CHRM3_chr1_239381568_239920450	0/0	t0004	7412	5	1	0	2	1	1	copy fasta	CHRM3	chr1	239381568	239920450
CHRM3_chr1_239381568_239920450	0/0	t0005	7412	4	4	0	0	0	0	copy fasta	CHRM3	chr1	239381568	239920450
CHRM3_chr1_239381568_239920450	1/0	t0006	7407	4	2	0	0	0	1	copy fasta	CHRM3	chr1	239381568	239920450
CHRM3_chr1_239381568_239920450	0/0	t0007	7407	3	0	2	0	1	0	copy fasta	CHRM3	chr1	239381568	239920450
CHRM3_chr1_239381568_239920450	0/1	t0008	7410	3	0	1	0	1	0	copy fasta	CHRM3	chr1	239381568	239920450
CHRM3_chr1_239381568_239920450	0/0	t0009	7412	3	3	0	0	0	0	copy fasta	CHRM3	chr1	239381568	239920450
CHRM3_chr1_239381568_239920450	0/0	t0010	7407	3	0	1	1	0	1	copy fasta	CHRM3	chr1	239381568	239920450
CHRM3_chr1_239381568_239920450	0/0	t0011	7407	2	0	2	0	0	0	copy fasta	CHRM3	chr1	239381568	239920450
CHRM3_chr1_239381568_239920450	0/0	t0012	7412	2	2	0	0	0	0	copy fasta	CHRM3	chr1	239381568	239920450
CHRM3_chr1_239381568_239920450	0/0	t0013	7410	2	2	0	0	0	0	copy fasta	CHRM3	chr1	239381568	239920450
CHRM3_chr1_239381568_239920450	0/0	t0014	7412	2	2	0	0	0	0	copy fasta	CHRM3	chr1	239381568	239920450
CHRM3_chr1_239381568_239920450	0/0	t0015	7410	2	0	2	0	0	0	copy fasta	CHRM3	chr1	239381568	239920450
CHRM3_chr1_239381568_239920450	0/0	t0016	7409	2	2	0	0	0	0	copy fasta	CHRM3	chr1	239381568	239920450
CHRM3_chr1_239381568_239920450	0/0	t0017	7407	2	0	0	2	0	0	copy fasta	CHRM3	chr1	239381568	239920450
CHRM3_chr1_239381568_239920450	0/0	t0018	7406	2	1	1	0	0	0	copy fasta	CHRM3	chr1	239381568	239920450
CHRM3_chr1_239381568_239920450	0/0	t0019	7409	2	2	0	0	0	0	copy fasta	CHRM3	chr1	239381568	239920450
CHRM3_chr1_239381568_239920450	0/0	t0020	7406	2	1	1	0	0	0	copy fasta	CHRM3	chr1	239381568	239920450
CHRM3_chr1_239381568_239920450	0/0	t0021	7405	2	2	0	0	0	0	copy fasta	CHRM3	chr1	239381568	239920450
CHRM3_chr1_239381568_239920450	0/0	t0022	7407	1	0	0	1	0	0	copy fasta	CHRM3	chr1	239381568	239920450
CHRM3_chr1_239381568_239920450	0/0	t0023	7407	1	0	0	0	0	1	copy fasta	CHRM3	chr1	239381568	239920450
CHRM3_chr1_239381568_239920450	0/0	t0024	7409	1	0	0	1	0	0	copy fasta	CHRM3	chr1	239381568	239920450
CHRM3_chr1_239381568_239920450	0/0	t0025	7409	1	0	1	0	0	0	copy fasta	CHRM3	chr1	239381568	239920450
CHRM3_chr1_239381568_239920450	0/0	t0026	7411	1	0	1	0	0	0	copy fasta	CHRM3	chr1	239381568	239920450
CHRM3_chr1_239381568_239920450	0/0	t0027	7407	1	1	0	0	0	0	copy fasta	CHRM3	chr1	239381568	239920450
CHRM3_chr1_239381568_239920450	0/0	t0028	7412	1	0	0	1	0	0	copy fasta	CHRM3	chr1	239381568	239920450