JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CHRM3_chr1_239381568_239920450	0/0	t0029	7412	1	1	0	0	0	0	copy fasta	CHRM3	chr1	239381568	239920450
CHRM3_chr1_239381568_239920450	0/0	t0030	7410	1	0	0	0	0	1	copy fasta	CHRM3	chr1	239381568	239920450
CHRM3_chr1_239381568_239920450	0/0	t0031	7408	1	0	0	1	0	0	copy fasta	CHRM3	chr1	239381568	239920450
CHRM3_chr1_239381568_239920450	0/0	t0032	7407	1	0	0	1	0	0	copy fasta	CHRM3	chr1	239381568	239920450
CHRM3_chr1_239381568_239920450	0/0	t0033	7407	1	1	0	0	0	0	copy fasta	CHRM3	chr1	239381568	239920450
CHRM3_chr1_239381568_239920450	0/0	t0034	7407	1	1	0	0	0	0	copy fasta	CHRM3	chr1	239381568	239920450
CHRM3_chr1_239381568_239920450	0/0	t0035	7405	1	1	0	0	0	0	copy fasta	CHRM3	chr1	239381568	239920450
CHRM3_chr1_239381568_239920450	0/0	t0036	7405	1	1	0	0	0	0	copy fasta	CHRM3	chr1	239381568	239920450
CHRM3_chr1_239381568_239920450	0/0	t0037	7407	1	1	0	0	0	0	copy fasta	CHRM3	chr1	239381568	239920450
CHRM3_chr1_239381568_239920450	0/0	t0038	7405	1	1	0	0	0	0	copy fasta	CHRM3	chr1	239381568	239920450
CHRM3_chr1_239381568_239920450	0/0	t0039	7412	1	1	0	0	0	0	copy fasta	CHRM3	chr1	239381568	239920450
CHRM3_chr1_239381568_239920450	0/0	t0040	7407	1	1	0	0	0	0	copy fasta	CHRM3	chr1	239381568	239920450
CHRM3_chr1_239381568_239920450	0/0	t0041	7405	1	0	1	0	0	0	copy fasta	CHRM3	chr1	239381568	239920450
CHRM3_chr1_239381568_239920450	0/0	t0042	7408	1	1	0	0	0	0	copy fasta	CHRM3	chr1	239381568	239920450
CHRM3_chr1_239381568_239920450	0/0	t0043	7412	1	0	1	0	0	0	copy fasta	CHRM3	chr1	239381568	239920450
CHRM3_chr1_239381568_239920450	0/0	t0044	7409	1	0	0	0	0	1	copy fasta	CHRM3	chr1	239381568	239920450
CHRM3_chr1_239381568_239920450	0/0	t0045	7411	1	0	1	0	0	0	copy fasta	CHRM3	chr1	239381568	239920450
CHRM3_chr1_239381568_239920450	0/0	t0046	7410	1	1	0	0	0	0	copy fasta	CHRM3	chr1	239381568	239920450
CHRM3_chr1_239381568_239920450	0/0	t0047	7409	1	0	0	0	0	1	copy fasta	CHRM3	chr1	239381568	239920450
CHRM3_chr1_239381568_239920450	0/0	t0048	7408	1	1	0	0	0	0	copy fasta	CHRM3	chr1	239381568	239920450
CHRM3_chr1_239381568_239920450	0/0	t0049	7407	1	0	0	0	0	1	copy fasta	CHRM3	chr1	239381568	239920450
CHRM3_chr1_239381568_239920450	0/0	t0050	7397	1	0	0	0	0	1	copy fasta	CHRM3	chr1	239381568	239920450
CHRM3_chr1_239381568_239920450	0/0	t0051	7407	1	0	0	0	1	0	copy fasta	CHRM3	chr1	239381568	239920450
CHRM3_chr1_239381568_239920450	0/0	t0052	7407	1	0	0	1	0	0	copy fasta	CHRM3	chr1	239381568	239920450
CHRM3_chr1_239381568_239920450	0/0	t0053	7405	1	1	0	0	0	0	copy fasta	CHRM3	chr1	239381568	239920450
CHRM3_chr1_239381568_239920450	0/0	t0054	7405	1	1	0	0	0	0	copy fasta	CHRM3	chr1	239381568	239920450
CHRM3_chr1_239381568_239920450	0/0	t0055	7405	1	1	0	0	0	0	copy fasta	CHRM3	chr1	239381568	239920450
CHRM3_chr1_239381568_239920450	0/0	t0056	7405	1	0	1	0	0	0	copy fasta	CHRM3	chr1	239381568	239920450
CHRM3_chr1_239381568_239920450	0/0	t0057	7405	1	0	1	0	0	0	copy fasta	CHRM3	chr1	239381568	239920450
CHRM3_chr1_239381568_239920450	0/0	t0058	7407	1	1	0	0	0	0	copy fasta	CHRM3	chr1	239381568	239920450
CHRM3_chr1_239381568_239920450	0/0	t0059	7409	1	0	0	0	0	1	copy fasta	CHRM3	chr1	239381568	239920450
CHRM3_chr1_239381568_239920450	0/0	t0060	7412	1	1	0	0	0	0	copy fasta	CHRM3	chr1	239381568	239920450
CHRM3_chr1_239381568_239920450	0/0	t0061	7411	1	1	0	0	0	0	copy fasta	CHRM3	chr1	239381568	239920450
CHRM4_chr11_46378789_46396776	1/1	t0001	1605	299	94	54	106	9	34	copy fasta	CHRM4	chr11	46378789	46396776
CHRM4_chr11_46378789_46396776	0/0	t0002	1605	3	0	2	0	1	0	copy fasta	CHRM4	chr11	46378789	46396776
CHRM4_chr11_46378789_46396776	0/0	t0003	1605	1	1	0	0	0	0	copy fasta	CHRM4	chr11	46378789	46396776
CHRM4_chr11_46378789_46396776	0/0	t0004	1605	1	1	0	0	0	0	copy fasta	CHRM4	chr11	46378789	46396776
CHRM4_chr11_46378789_46396776	0/0	t0005	1605	1	0	0	1	0	0	copy fasta	CHRM4	chr11	46378789	46396776
CHRM4_chr11_46378789_46396776	0/0	t0006	1605	1	1	0	0	0	0	copy fasta	CHRM4	chr11	46378789	46396776
CHRM4_chr11_46378789_46396776	0/0	t0007	1605	1	1	0	0	0	0	copy fasta	CHRM4	chr11	46378789	46396776
CHRM4_chr11_46378789_46396776	0/0	t0008	1605	1	0	0	1	0	0	copy fasta	CHRM4	chr11	46378789	46396776
CHRM5_chr15_33963497_34072458	0/0	t0001	4206	100	6	9	69	2	14	copy fasta	CHRM5	chr15	33963497	34072458
CHRM5_chr15_33963497_34072458	0/0	t0002	4205	83	4	23	40	4	12	copy fasta	CHRM5	chr15	33963497	34072458
CHRM5_chr15_33963497_34072458	0/0	t0003	4206	25	20	3	2	0	0	copy fasta	CHRM5	chr15	33963497	34072458
CHRM5_chr15_33963497_34072458	0/1	t0004	4205	14	2	5	0	2	4	copy fasta	CHRM5	chr15	33963497	34072458
CHRM5_chr15_33963497_34072458	0/0	t0005	4206	9	3	3	3	0	0	copy fasta	CHRM5	chr15	33963497	34072458
CHRM5_chr15_33963497_34072458	0/0	t0006	4205	8	8	0	0	0	0	copy fasta	CHRM5	chr15	33963497	34072458
CHRM5_chr15_33963497_34072458	0/0	t0007	4205	7	0	0	7	0	0	copy fasta	CHRM5	chr15	33963497	34072458
CHRM5_chr15_33963497_34072458	0/0	t0008	4206	7	0	3	4	0	0	copy fasta	CHRM5	chr15	33963497	34072458
CHRM5_chr15_33963497_34072458	0/0	t0009	4205	7	7	0	0	0	0	copy fasta	CHRM5	chr15	33963497	34072458