JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CHRM5_chr15_33963497_34072458	0/0	t0010	4205	7	6	1	0	0	0	copy fasta	CHRM5	chr15	33963497	34072458
CHRM5_chr15_33963497_34072458	0/0	t0011	4205	6	3	2	0	0	1	copy fasta	CHRM5	chr15	33963497	34072458
CHRM5_chr15_33963497_34072458	0/0	t0012	4205	6	0	0	6	0	0	copy fasta	CHRM5	chr15	33963497	34072458
CHRM5_chr15_33963497_34072458	0/0	t0013	4205	5	5	0	0	0	0	copy fasta	CHRM5	chr15	33963497	34072458
CHRM5_chr15_33963497_34072458	0/0	t0014	4205	5	1	0	2	1	1	copy fasta	CHRM5	chr15	33963497	34072458
CHRM5_chr15_33963497_34072458	0/0	t0015	4205	4	3	1	0	0	0	copy fasta	CHRM5	chr15	33963497	34072458
CHRM5_chr15_33963497_34072458	0/0	t0016	4205	4	4	0	0	0	0	copy fasta	CHRM5	chr15	33963497	34072458
CHRM5_chr15_33963497_34072458	0/0	t0017	4205	4	0	2	0	0	2	copy fasta	CHRM5	chr15	33963497	34072458
CHRM5_chr15_33963497_34072458	1/0	t0018	4204	3	2	0	0	0	0	copy fasta	CHRM5	chr15	33963497	34072458
CHRM5_chr15_33963497_34072458	0/0	t0019	4205	3	3	0	0	0	0	copy fasta	CHRM5	chr15	33963497	34072458
CHRM5_chr15_33963497_34072458	0/0	t0020	4204	3	0	0	3	0	0	copy fasta	CHRM5	chr15	33963497	34072458
CHRM5_chr15_33963497_34072458	0/0	t0021	4205	3	0	0	3	0	0	copy fasta	CHRM5	chr15	33963497	34072458
CHRM5_chr15_33963497_34072458	0/0	t0022	4206	2	2	0	0	0	0	copy fasta	CHRM5	chr15	33963497	34072458
CHRM5_chr15_33963497_34072458	0/0	t0023	4205	2	2	0	0	0	0	copy fasta	CHRM5	chr15	33963497	34072458
CHRM5_chr15_33963497_34072458	0/0	t0024	4205	2	0	1	0	0	1	copy fasta	CHRM5	chr15	33963497	34072458
CHRM5_chr15_33963497_34072458	0/0	t0025	4206	2	0	0	0	0	2	copy fasta	CHRM5	chr15	33963497	34072458
CHRM5_chr15_33963497_34072458	0/0	t0026	4205	2	2	0	0	0	0	copy fasta	CHRM5	chr15	33963497	34072458
CHRM5_chr15_33963497_34072458	0/0	t0027	4206	1	1	0	0	0	0	copy fasta	CHRM5	chr15	33963497	34072458
CHRM5_chr15_33963497_34072458	0/0	t0028	4206	1	1	0	0	0	0	copy fasta	CHRM5	chr15	33963497	34072458
CHRM5_chr15_33963497_34072458	0/0	t0029	4205	1	0	0	1	0	0	copy fasta	CHRM5	chr15	33963497	34072458
CHRM5_chr15_33963497_34072458	0/0	t0030	4206	1	1	0	0	0	0	copy fasta	CHRM5	chr15	33963497	34072458
CHRM5_chr15_33963497_34072458	0/0	t0031	4205	1	1	0	0	0	0	copy fasta	CHRM5	chr15	33963497	34072458
CHRM5_chr15_33963497_34072458	0/0	t0032	4205	1	1	0	0	0	0	copy fasta	CHRM5	chr15	33963497	34072458
CHRM5_chr15_33963497_34072458	0/0	t0033	4206	1	0	0	1	0	0	copy fasta	CHRM5	chr15	33963497	34072458
CHRM5_chr15_33963497_34072458	0/0	t0034	4205	1	1	0	0	0	0	copy fasta	CHRM5	chr15	33963497	34072458
CHRM5_chr15_33963497_34072458	0/0	t0035	4205	1	0	0	1	0	0	copy fasta	CHRM5	chr15	33963497	34072458
CHRM5_chr15_33963497_34072458	0/0	t0036	4206	1	0	0	0	0	1	copy fasta	CHRM5	chr15	33963497	34072458
CHRM5_chr15_33963497_34072458	0/0	t0037	4204	1	1	0	0	0	0	copy fasta	CHRM5	chr15	33963497	34072458
CHRM5_chr15_33963497_34072458	0/0	t0038	4204	1	0	0	0	1	0	copy fasta	CHRM5	chr15	33963497	34072458
CHRM5_chr15_33963497_34072458	0/0	t0039	4204	1	1	0	0	0	0	copy fasta	CHRM5	chr15	33963497	34072458
CHRM5_chr15_33963497_34072458	0/0	t0040	4204	1	1	0	0	0	0	copy fasta	CHRM5	chr15	33963497	34072458
CHRM5_chr15_33963497_34072458	0/0	t0041	4205	1	0	1	0	0	0	copy fasta	CHRM5	chr15	33963497	34072458
CHRNA10_chr11_3660587_3676384	1/1	t0001	593	359	58	61	179	16	43	copy fasta	CHRNA10	chr11	3660587	3676384
CHRNA10_chr11_3660587_3676384	0/0	t0002	593	52	20	5	24	0	3	copy fasta	CHRNA10	chr11	3660587	3676384
CHRNA10_chr11_3660587_3676384	0/0	t0003	593	12	11	0	0	0	1	copy fasta	CHRNA10	chr11	3660587	3676384
CHRNA10_chr11_3660587_3676384	0/0	t0004	593	9	0	0	9	0	0	copy fasta	CHRNA10	chr11	3660587	3676384
CHRNA10_chr11_3660587_3676384	0/0	t0005	593	6	5	1	0	0	0	copy fasta	CHRNA10	chr11	3660587	3676384
CHRNA10_chr11_3660587_3676384	0/0	t0006	593	6	0	3	0	2	1	copy fasta	CHRNA10	chr11	3660587	3676384
CHRNA10_chr11_3660587_3676384	0/0	t0007	593	2	2	0	0	0	0	copy fasta	CHRNA10	chr11	3660587	3676384
CHRNA10_chr11_3660587_3676384	0/0	t0008	593	1	0	0	1	0	0	copy fasta	CHRNA10	chr11	3660587	3676384
CHRNA10_chr11_3660587_3676384	0/0	t0009	593	1	1	0	0	0	0	copy fasta	CHRNA10	chr11	3660587	3676384
CHRNA10_chr11_3660587_3676384	0/0	t0010	593	1	1	0	0	0	0	copy fasta	CHRNA10	chr11	3660587	3676384
CHRNA10_chr11_3660587_3676384	0/0	t0011	593	1	0	0	1	0	0	copy fasta	CHRNA10	chr11	3660587	3676384
CHRNA1_chr2_174742592_174769472	1/1	t0001	611	359	84	58	152	18	45	copy fasta	CHRNA1	chr2	174742592	174769472
CHRNA1_chr2_174742592_174769472	0/0	t0002	611	2	2	0	0	0	0	copy fasta	CHRNA1	chr2	174742592	174769472
CHRNA1_chr2_174742592_174769472	0/0	t0003	611	2	2	0	0	0	0	copy fasta	CHRNA1	chr2	174742592	174769472
CHRNA1_chr2_174742592_174769472	0/0	t0004	610	2	2	0	0	0	0	copy fasta	CHRNA1	chr2	174742592	174769472
CHRNA1_chr2_174742592_174769472	0/0	t0005	611	1	1	0	0	0	0	copy fasta	CHRNA1	chr2	174742592	174769472
CHRNA1_chr2_174742592_174769472	0/0	t0006	611	1	0	0	0	0	1	copy fasta	CHRNA1	chr2	174742592	174769472
CHRNA1_chr2_174742592_174769472	0/0	t0007	610	1	1	0	0	0	0	copy fasta	CHRNA1	chr2	174742592	174769472