JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CHRNA1_chr2_174742592_174769472	0/0	t0008	611	1	1	0	0	0	0	copy fasta	CHRNA1	chr2	174742592	174769472
CHRNA1_chr2_174742592_174769472	0/0	t0009	611	1	1	0	0	0	0	copy fasta	CHRNA1	chr2	174742592	174769472
CHRNA2_chr8_27454756_27484261	0/0	t0001	2448	92	22	22	23	4	21	copy fasta	CHRNA2	chr8	27454756	27484261
CHRNA2_chr8_27454756_27484261	1/0	t0002	2448	88	5	11	66	1	4	copy fasta	CHRNA2	chr8	27454756	27484261
CHRNA2_chr8_27454756_27484261	0/0	t0003	2448	69	1	11	46	3	8	copy fasta	CHRNA2	chr8	27454756	27484261
CHRNA2_chr8_27454756_27484261	0/1	t0004	2448	57	11	14	24	3	4	copy fasta	CHRNA2	chr8	27454756	27484261
CHRNA2_chr8_27454756_27484261	0/0	t0005	2446	12	1	5	4	1	1	copy fasta	CHRNA2	chr8	27454756	27484261
CHRNA2_chr8_27454756_27484261	0/0	t0006	2446	11	0	6	0	1	4	copy fasta	CHRNA2	chr8	27454756	27484261
CHRNA2_chr8_27454756_27484261	0/0	t0007	2446	10	0	0	10	0	0	copy fasta	CHRNA2	chr8	27454756	27484261
CHRNA2_chr8_27454756_27484261	0/0	t0008	2448	10	0	0	10	0	0	copy fasta	CHRNA2	chr8	27454756	27484261
CHRNA2_chr8_27454756_27484261	0/0	t0009	2448	9	9	0	0	0	0	copy fasta	CHRNA2	chr8	27454756	27484261
CHRNA2_chr8_27454756_27484261	0/0	t0010	2448	9	8	1	0	0	0	copy fasta	CHRNA2	chr8	27454756	27484261
CHRNA2_chr8_27454756_27484261	0/0	t0011	2445	7	7	0	0	0	0	copy fasta	CHRNA2	chr8	27454756	27484261
CHRNA2_chr8_27454756_27484261	0/0	t0012	2448	6	0	0	6	0	0	copy fasta	CHRNA2	chr8	27454756	27484261
CHRNA2_chr8_27454756_27484261	0/0	t0013	2446	5	0	5	0	0	0	copy fasta	CHRNA2	chr8	27454756	27484261
CHRNA2_chr8_27454756_27484261	0/0	t0014	2448	5	5	0	0	0	0	copy fasta	CHRNA2	chr8	27454756	27484261
CHRNA2_chr8_27454756_27484261	0/0	t0015	2446	4	0	3	0	0	1	copy fasta	CHRNA2	chr8	27454756	27484261
CHRNA2_chr8_27454756_27484261	0/0	t0016	2448	4	0	0	4	0	0	copy fasta	CHRNA2	chr8	27454756	27484261
CHRNA2_chr8_27454756_27484261	0/0	t0017	2448	3	2	0	1	0	0	copy fasta	CHRNA2	chr8	27454756	27484261
CHRNA2_chr8_27454756_27484261	0/0	t0018	2448	3	0	0	0	0	3	copy fasta	CHRNA2	chr8	27454756	27484261
CHRNA2_chr8_27454756_27484261	0/0	t0019	2448	3	3	0	0	0	0	copy fasta	CHRNA2	chr8	27454756	27484261
CHRNA2_chr8_27454756_27484261	0/0	t0020	2448	3	1	0	1	1	0	copy fasta	CHRNA2	chr8	27454756	27484261
CHRNA2_chr8_27454756_27484261	0/0	t0021	2448	3	3	0	0	0	0	copy fasta	CHRNA2	chr8	27454756	27484261
CHRNA2_chr8_27454756_27484261	0/0	t0022	2448	2	0	0	2	0	0	copy fasta	CHRNA2	chr8	27454756	27484261
CHRNA2_chr8_27454756_27484261	0/0	t0023	2445	2	2	0	0	0	0	copy fasta	CHRNA2	chr8	27454756	27484261
CHRNA2_chr8_27454756_27484261	0/0	t0024	2448	2	2	0	0	0	0	copy fasta	CHRNA2	chr8	27454756	27484261
CHRNA2_chr8_27454756_27484261	0/0	t0025	2448	2	0	2	0	0	0	copy fasta	CHRNA2	chr8	27454756	27484261
CHRNA2_chr8_27454756_27484261	0/0	t0026	2448	2	2	0	0	0	0	copy fasta	CHRNA2	chr8	27454756	27484261
CHRNA2_chr8_27454756_27484261	0/0	t0027	2448	2	2	0	0	0	0	copy fasta	CHRNA2	chr8	27454756	27484261
CHRNA2_chr8_27454756_27484261	0/0	t0028	2446	1	0	0	0	1	0	copy fasta	CHRNA2	chr8	27454756	27484261
CHRNA2_chr8_27454756_27484261	0/0	t0029	2446	1	0	0	0	1	0	copy fasta	CHRNA2	chr8	27454756	27484261
CHRNA2_chr8_27454756_27484261	0/0	t0030	2446	1	0	0	1	0	0	copy fasta	CHRNA2	chr8	27454756	27484261
CHRNA2_chr8_27454756_27484261	0/0	t0031	2446	1	0	0	1	0	0	copy fasta	CHRNA2	chr8	27454756	27484261
CHRNA2_chr8_27454756_27484261	0/0	t0032	2446	1	0	1	0	0	0	copy fasta	CHRNA2	chr8	27454756	27484261
CHRNA2_chr8_27454756_27484261	0/0	t0033	2448	1	0	0	1	0	0	copy fasta	CHRNA2	chr8	27454756	27484261
CHRNA2_chr8_27454756_27484261	0/0	t0034	2448	1	0	0	0	0	1	copy fasta	CHRNA2	chr8	27454756	27484261
CHRNA2_chr8_27454756_27484261	0/0	t0035	2445	1	1	0	0	0	0	copy fasta	CHRNA2	chr8	27454756	27484261
CHRNA2_chr8_27454756_27484261	0/0	t0036	2448	1	0	0	0	0	1	copy fasta	CHRNA2	chr8	27454756	27484261
CHRNA2_chr8_27454756_27484261	0/0	t0037	2448	1	0	0	1	0	0	copy fasta	CHRNA2	chr8	27454756	27484261
CHRNA2_chr8_27454756_27484261	0/0	t0038	2448	1	0	1	0	0	0	copy fasta	CHRNA2	chr8	27454756	27484261
CHRNA2_chr8_27454756_27484261	0/0	t0039	2448	1	0	1	0	0	0	copy fasta	CHRNA2	chr8	27454756	27484261
CHRNA2_chr8_27454756_27484261	0/0	t0040	2448	1	1	0	0	0	0	copy fasta	CHRNA2	chr8	27454756	27484261
CHRNA2_chr8_27454756_27484261	0/0	t0041	2448	1	1	0	0	0	0	copy fasta	CHRNA2	chr8	27454756	27484261
CHRNA2_chr8_27454756_27484261	0/0	t0042	2448	1	0	1	0	0	0	copy fasta	CHRNA2	chr8	27454756	27484261
CHRNA2_chr8_27454756_27484261	0/0	t0043	2448	1	0	1	0	0	0	copy fasta	CHRNA2	chr8	27454756	27484261
CHRNA2_chr8_27454756_27484261	0/0	t0044	2448	1	1	0	0	0	0	copy fasta	CHRNA2	chr8	27454756	27484261
CHRNA2_chr8_27454756_27484261	0/0	t0045	2448	1	1	0	0	0	0	copy fasta	CHRNA2	chr8	27454756	27484261
CHRNA2_chr8_27454756_27484261	0/0	t0046	2448	1	0	0	1	0	0	copy fasta	CHRNA2	chr8	27454756	27484261
CHRNA2_chr8_27454756_27484261	0/0	t0047	2448	1	0	1	0	0	0	copy fasta	CHRNA2	chr8	27454756	27484261
CHRNA2_chr8_27454756_27484261	0/0	t0048	2448	1	0	1	0	0	0	copy fasta	CHRNA2	chr8	27454756	27484261