JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CHRNA2_chr8_27454756_27484261	0/0	t0049	2448	1	0	0	1	0	0	copy fasta	CHRNA2	chr8	27454756	27484261
CHRNA2_chr8_27454756_27484261	0/0	t0050	2448	1	0	0	1	0	0	copy fasta	CHRNA2	chr8	27454756	27484261
CHRNA2_chr8_27454756_27484261	0/0	t0051	2448	1	0	0	0	1	0	copy fasta	CHRNA2	chr8	27454756	27484261
CHRNA2_chr8_27454756_27484261	0/0	t0052	2448	1	0	0	1	0	0	copy fasta	CHRNA2	chr8	27454756	27484261
CHRNA2_chr8_27454756_27484261	0/0	t0053	2448	1	0	0	0	1	0	copy fasta	CHRNA2	chr8	27454756	27484261
CHRNA2_chr8_27454756_27484261	0/0	t0054	2448	1	0	0	1	0	0	copy fasta	CHRNA2	chr8	27454756	27484261
CHRNA2_chr8_27454756_27484261	0/0	t0055	2448	1	1	0	0	0	0	copy fasta	CHRNA2	chr8	27454756	27484261
CHRNA2_chr8_27454756_27484261	0/0	t0056	2448	1	0	1	0	0	0	copy fasta	CHRNA2	chr8	27454756	27484261
CHRNA2_chr8_27454756_27484261	0/0	t0057	2445	1	1	0	0	0	0	copy fasta	CHRNA2	chr8	27454756	27484261
CHRNA2_chr8_27454756_27484261	0/0	t0058	2448	1	1	0	0	0	0	copy fasta	CHRNA2	chr8	27454756	27484261
CHRNA2_chr8_27454756_27484261	0/0	t0059	2448	1	1	0	0	0	0	copy fasta	CHRNA2	chr8	27454756	27484261
CHRNA2_chr8_27454756_27484261	0/0	t0060	2448	1	1	0	0	0	0	copy fasta	CHRNA2	chr8	27454756	27484261
CHRNA3_chr15_78590309_78625996	0/0	t0001	1505	153	20	34	83	3	13	copy fasta	CHRNA3	chr15	78590309	78625996
CHRNA3_chr15_78590309_78625996	1/0	t0002	1498	82	14	15	32	3	17	copy fasta	CHRNA3	chr15	78590309	78625996
CHRNA3_chr15_78590309_78625996	0/0	t0003	1505	54	0	0	54	0	0	copy fasta	CHRNA3	chr15	78590309	78625996
CHRNA3_chr15_78590309_78625996	0/1	t0004	1502	40	4	16	5	5	9	copy fasta	CHRNA3	chr15	78590309	78625996
CHRNA3_chr15_78590309_78625996	0/0	t0005	1501	21	5	3	13	0	0	copy fasta	CHRNA3	chr15	78590309	78625996
CHRNA3_chr15_78590309_78625996	0/0	t0006	1501	18	16	2	0	0	0	copy fasta	CHRNA3	chr15	78590309	78625996
CHRNA3_chr15_78590309_78625996	0/0	t0007	1502	11	11	0	0	0	0	copy fasta	CHRNA3	chr15	78590309	78625996
CHRNA3_chr15_78590309_78625996	0/0	t0008	1496	8	8	0	0	0	0	copy fasta	CHRNA3	chr15	78590309	78625996
CHRNA3_chr15_78590309_78625996	0/0	t0009	1501	3	0	0	3	0	0	copy fasta	CHRNA3	chr15	78590309	78625996
CHRNA3_chr15_78590309_78625996	0/0	t0010	1502	2	0	0	2	0	0	copy fasta	CHRNA3	chr15	78590309	78625996
CHRNA3_chr15_78590309_78625996	0/0	t0011	1509	2	2	0	0	0	0	copy fasta	CHRNA3	chr15	78590309	78625996
CHRNA3_chr15_78590309_78625996	0/0	t0012	1505	2	2	0	0	0	0	copy fasta	CHRNA3	chr15	78590309	78625996
CHRNA3_chr15_78590309_78625996	0/0	t0013	1501	2	2	0	0	0	0	copy fasta	CHRNA3	chr15	78590309	78625996
CHRNA3_chr15_78590309_78625996	0/0	t0014	1496	1	1	0	0	0	0	copy fasta	CHRNA3	chr15	78590309	78625996
CHRNA3_chr15_78590309_78625996	0/0	t0015	1498	1	0	0	1	0	0	copy fasta	CHRNA3	chr15	78590309	78625996
CHRNA3_chr15_78590309_78625996	0/0	t0016	1498	1	0	0	1	0	0	copy fasta	CHRNA3	chr15	78590309	78625996
CHRNA3_chr15_78590309_78625996	0/0	t0017	1502	1	1	0	0	0	0	copy fasta	CHRNA3	chr15	78590309	78625996
CHRNA3_chr15_78590309_78625996	0/0	t0018	1502	1	0	0	0	1	0	copy fasta	CHRNA3	chr15	78590309	78625996
CHRNA3_chr15_78590309_78625996	0/0	t0019	1506	1	0	0	0	0	1	copy fasta	CHRNA3	chr15	78590309	78625996
CHRNA3_chr15_78590309_78625996	0/0	t0020	1510	1	1	0	0	0	0	copy fasta	CHRNA3	chr15	78590309	78625996
CHRNA3_chr15_78590309_78625996	0/0	t0021	1501	1	1	0	0	0	0	copy fasta	CHRNA3	chr15	78590309	78625996
CHRNA3_chr15_78590309_78625996	0/0	t0022	1505	1	1	0	0	0	0	copy fasta	CHRNA3	chr15	78590309	78625996
CHRNA3_chr15_78590309_78625996	0/0	t0023	1506	1	0	0	1	0	0	copy fasta	CHRNA3	chr15	78590309	78625996
CHRNA3_chr15_78590309_78625996	0/0	t0024	1498	1	1	0	0	0	0	copy fasta	CHRNA3	chr15	78590309	78625996
CHRNA3_chr15_78590309_78625996	0/0	t0025	1498	1	0	0	1	0	0	copy fasta	CHRNA3	chr15	78590309	78625996
CHRNA4_chr20_63338223_63366349	0/0	t0001	3700	43	3	13	9	5	13	copy fasta	CHRNA4	chr20	63338223	63366349
CHRNA4_chr20_63338223_63366349	1/0	t0002	3700	24	20	1	0	1	1	copy fasta	CHRNA4	chr20	63338223	63366349
CHRNA4_chr20_63338223_63366349	0/1	t0003	3702	21	0	3	16	0	1	copy fasta	CHRNA4	chr20	63338223	63366349
CHRNA4_chr20_63338223_63366349	0/0	t0004	3702	18	7	5	5	1	0	copy fasta	CHRNA4	chr20	63338223	63366349
CHRNA4_chr20_63338223_63366349	0/0	t0005	3700	10	1	1	5	0	3	copy fasta	CHRNA4	chr20	63338223	63366349
CHRNA4_chr20_63338223_63366349	0/0	t0006	3700	6	5	1	0	0	0	copy fasta	CHRNA4	chr20	63338223	63366349
CHRNA4_chr20_63338223_63366349	0/0	t0007	3703	6	0	0	1	0	5	copy fasta	CHRNA4	chr20	63338223	63366349
CHRNA4_chr20_63338223_63366349	0/0	t0008	3700	4	4	0	0	0	0	copy fasta	CHRNA4	chr20	63338223	63366349
CHRNA4_chr20_63338223_63366349	0/0	t0009	3702	3	0	0	1	0	2	copy fasta	CHRNA4	chr20	63338223	63366349
CHRNA4_chr20_63338223_63366349	0/0	t0010	3700	2	0	2	0	0	0	copy fasta	CHRNA4	chr20	63338223	63366349
CHRNA4_chr20_63338223_63366349	0/0	t0011	3700	2	2	0	0	0	0	copy fasta	CHRNA4	chr20	63338223	63366349
CHRNA4_chr20_63338223_63366349	0/0	t0012	3700	2	0	2	0	0	0	copy fasta	CHRNA4	chr20	63338223	63366349
CHRNA4_chr20_63338223_63366349	0/0	t0013	3702	2	0	0	0	0	2	copy fasta	CHRNA4	chr20	63338223	63366349