JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CHRNA4_chr20_63338223_63366349	0/0	t0014	3702	2	0	0	0	1	1	copy fasta	CHRNA4	chr20	63338223	63366349
CHRNA4_chr20_63338223_63366349	0/0	t0015	3675	1	0	0	0	0	1	copy fasta	CHRNA4	chr20	63338223	63366349
CHRNA4_chr20_63338223_63366349	0/0	t0016	3700	1	1	0	0	0	0	copy fasta	CHRNA4	chr20	63338223	63366349
CHRNA4_chr20_63338223_63366349	0/0	t0017	3702	1	1	0	0	0	0	copy fasta	CHRNA4	chr20	63338223	63366349
CHRNA4_chr20_63338223_63366349	0/0	t0018	3700	1	1	0	0	0	0	copy fasta	CHRNA4	chr20	63338223	63366349
CHRNA4_chr20_63338223_63366349	0/0	t0019	3704	1	0	1	0	0	0	copy fasta	CHRNA4	chr20	63338223	63366349
CHRNA4_chr20_63338223_63366349	0/0	t0020	3702	1	1	0	0	0	0	copy fasta	CHRNA4	chr20	63338223	63366349
CHRNA4_chr20_63338223_63366349	0/0	t0021	3703	1	0	0	0	0	1	copy fasta	CHRNA4	chr20	63338223	63366349
CHRNA4_chr20_63338223_63366349	0/0	t0022	3703	1	1	0	0	0	0	copy fasta	CHRNA4	chr20	63338223	63366349
CHRNA4_chr20_63338223_63366349	0/0	t0023	3703	1	0	1	0	0	0	copy fasta	CHRNA4	chr20	63338223	63366349
CHRNA4_chr20_63338223_63366349	0/0	t0024	3700	1	0	1	0	0	0	copy fasta	CHRNA4	chr20	63338223	63366349
CHRNA4_chr20_63338223_63366349	0/0	t0025	3700	1	0	1	0	0	0	copy fasta	CHRNA4	chr20	63338223	63366349
CHRNA4_chr20_63338223_63366349	0/0	t0026	3700	1	0	0	1	0	0	copy fasta	CHRNA4	chr20	63338223	63366349
CHRNA4_chr20_63338223_63366349	0/0	t0027	3702	1	0	1	0	0	0	copy fasta	CHRNA4	chr20	63338223	63366349
CHRNA4_chr20_63338223_63366349	0/0	t0028	3700	1	0	1	0	0	0	copy fasta	CHRNA4	chr20	63338223	63366349
CHRNA4_chr20_63338223_63366349	0/0	t0029	3702	1	0	0	1	0	0	copy fasta	CHRNA4	chr20	63338223	63366349
CHRNA4_chr20_63338223_63366349	0/0	t0030	3702	1	0	0	1	0	0	copy fasta	CHRNA4	chr20	63338223	63366349
CHRNA4_chr20_63338223_63366349	0/0	t0031	3700	1	0	0	1	0	0	copy fasta	CHRNA4	chr20	63338223	63366349
CHRNA4_chr20_63338223_63366349	0/0	t0032	3700	1	0	0	1	0	0	copy fasta	CHRNA4	chr20	63338223	63366349
CHRNA4_chr20_63338223_63366349	0/0	t0033	3702	1	0	0	1	0	0	copy fasta	CHRNA4	chr20	63338223	63366349
CHRNA4_chr20_63338223_63366349	0/0	t0034	3700	1	1	0	0	0	0	copy fasta	CHRNA4	chr20	63338223	63366349
CHRNA4_chr20_63338223_63366349	0/0	t0035	3702	1	0	0	1	0	0	copy fasta	CHRNA4	chr20	63338223	63366349
CHRNA4_chr20_63338223_63366349	0/0	t0036	3700	1	1	0	0	0	0	copy fasta	CHRNA4	chr20	63338223	63366349
CHRNA4_chr20_63338223_63366349	0/0	t0037	3700	1	1	0	0	0	0	copy fasta	CHRNA4	chr20	63338223	63366349
CHRNA5_chr15_78560520_78600269	0/0	t0001	2217	142	21	32	74	3	12	copy fasta	CHRNA5	chr15	78560520	78600269
CHRNA5_chr15_78560520_78600269	1/0	t0002	2217	58	12	16	20	1	8	copy fasta	CHRNA5	chr15	78560520	78600269
CHRNA5_chr15_78560520_78600269	0/0	t0003	2219	45	0	0	45	0	0	copy fasta	CHRNA5	chr15	78560520	78600269
CHRNA5_chr15_78560520_78600269	0/1	t0004	2217	36	3	13	5	6	8	copy fasta	CHRNA5	chr15	78560520	78600269
CHRNA5_chr15_78560520_78600269	0/0	t0005	2214	17	15	2	0	0	0	copy fasta	CHRNA5	chr15	78560520	78600269
CHRNA5_chr15_78560520_78600269	0/0	t0006	2217	13	0	1	8	1	3	copy fasta	CHRNA5	chr15	78560520	78600269
CHRNA5_chr15_78560520_78600269	0/0	t0007	2217	10	0	1	9	0	0	copy fasta	CHRNA5	chr15	78560520	78600269
CHRNA5_chr15_78560520_78600269	0/0	t0008	2217	10	10	0	0	0	0	copy fasta	CHRNA5	chr15	78560520	78600269
CHRNA5_chr15_78560520_78600269	0/0	t0009	2217	7	7	0	0	0	0	copy fasta	CHRNA5	chr15	78560520	78600269
CHRNA5_chr15_78560520_78600269	0/0	t0010	2217	6	1	1	2	0	2	copy fasta	CHRNA5	chr15	78560520	78600269
CHRNA5_chr15_78560520_78600269	0/0	t0011	2217	4	3	1	0	0	0	copy fasta	CHRNA5	chr15	78560520	78600269
CHRNA5_chr15_78560520_78600269	0/0	t0012	2217	3	0	1	2	0	0	copy fasta	CHRNA5	chr15	78560520	78600269
CHRNA5_chr15_78560520_78600269	0/0	t0013	2217	3	0	0	2	1	0	copy fasta	CHRNA5	chr15	78560520	78600269
CHRNA5_chr15_78560520_78600269	0/0	t0014	2217	3	3	0	0	0	0	copy fasta	CHRNA5	chr15	78560520	78600269
CHRNA5_chr15_78560520_78600269	0/0	t0015	2217	2	0	0	2	0	0	copy fasta	CHRNA5	chr15	78560520	78600269
CHRNA5_chr15_78560520_78600269	0/0	t0016	2217	2	1	1	0	0	0	copy fasta	CHRNA5	chr15	78560520	78600269
CHRNA5_chr15_78560520_78600269	0/0	t0017	2217	2	0	2	0	0	0	copy fasta	CHRNA5	chr15	78560520	78600269
CHRNA5_chr15_78560520_78600269	0/0	t0018	2217	2	2	0	0	0	0	copy fasta	CHRNA5	chr15	78560520	78600269
CHRNA5_chr15_78560520_78600269	0/0	t0019	2217	2	2	0	0	0	0	copy fasta	CHRNA5	chr15	78560520	78600269
CHRNA5_chr15_78560520_78600269	0/0	t0020	2217	2	1	1	0	0	0	copy fasta	CHRNA5	chr15	78560520	78600269
CHRNA5_chr15_78560520_78600269	0/0	t0021	2217	2	2	0	0	0	0	copy fasta	CHRNA5	chr15	78560520	78600269
CHRNA5_chr15_78560520_78600269	0/0	t0022	2217	1	0	0	1	0	0	copy fasta	CHRNA5	chr15	78560520	78600269
CHRNA5_chr15_78560520_78600269	0/0	t0023	2217	1	0	0	1	0	0	copy fasta	CHRNA5	chr15	78560520	78600269
CHRNA5_chr15_78560520_78600269	0/0	t0024	2217	1	1	0	0	0	0	copy fasta	CHRNA5	chr15	78560520	78600269
CHRNA5_chr15_78560520_78600269	0/0	t0025	2219	1	0	0	1	0	0	copy fasta	CHRNA5	chr15	78560520	78600269
CHRNA5_chr15_78560520_78600269	0/0	t0026	2217	1	0	0	0	0	1	copy fasta	CHRNA5	chr15	78560520	78600269