JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CHRNA5_chr15_78560520_78600269	0/0	t0027	2217	1	0	0	1	0	0	copy fasta	CHRNA5	chr15	78560520	78600269
CHRNA5_chr15_78560520_78600269	0/0	t0028	2217	1	0	0	1	0	0	copy fasta	CHRNA5	chr15	78560520	78600269
CHRNA5_chr15_78560520_78600269	0/0	t0029	2219	1	0	0	1	0	0	copy fasta	CHRNA5	chr15	78560520	78600269
CHRNA5_chr15_78560520_78600269	0/0	t0030	2219	1	0	0	1	0	0	copy fasta	CHRNA5	chr15	78560520	78600269
CHRNA5_chr15_78560520_78600269	0/0	t0031	2217	1	1	0	0	0	0	copy fasta	CHRNA5	chr15	78560520	78600269
CHRNA5_chr15_78560520_78600269	0/0	t0032	2217	1	1	0	0	0	0	copy fasta	CHRNA5	chr15	78560520	78600269
CHRNA6_chr8_42747620_42773786	1/1	t0001	916	167	8	42	93	6	16	copy fasta	CHRNA6	chr8	42747620	42773786
CHRNA6_chr8_42747620_42773786	0/0	t0002	916	91	40	9	35	0	7	copy fasta	CHRNA6	chr8	42747620	42773786
CHRNA6_chr8_42747620_42773786	0/0	t0003	917	47	32	12	0	2	1	copy fasta	CHRNA6	chr8	42747620	42773786
CHRNA6_chr8_42747620_42773786	0/0	t0004	916	10	10	0	0	0	0	copy fasta	CHRNA6	chr8	42747620	42773786
CHRNA6_chr8_42747620_42773786	0/0	t0005	917	6	0	1	3	0	2	copy fasta	CHRNA6	chr8	42747620	42773786
CHRNA6_chr8_42747620_42773786	0/0	t0006	916	5	0	0	1	0	4	copy fasta	CHRNA6	chr8	42747620	42773786
CHRNA6_chr8_42747620_42773786	0/0	t0007	915	5	1	1	2	0	1	copy fasta	CHRNA6	chr8	42747620	42773786
CHRNA6_chr8_42747620_42773786	0/0	t0008	915	4	0	2	0	0	2	copy fasta	CHRNA6	chr8	42747620	42773786
CHRNA6_chr8_42747620_42773786	0/0	t0009	916	4	0	0	4	0	0	copy fasta	CHRNA6	chr8	42747620	42773786
CHRNA6_chr8_42747620_42773786	0/0	t0010	916	2	0	1	0	0	1	copy fasta	CHRNA6	chr8	42747620	42773786
CHRNA6_chr8_42747620_42773786	0/0	t0011	916	2	2	0	0	0	0	copy fasta	CHRNA6	chr8	42747620	42773786
CHRNA6_chr8_42747620_42773786	0/0	t0012	916	1	1	0	0	0	0	copy fasta	CHRNA6	chr8	42747620	42773786
CHRNA6_chr8_42747620_42773786	0/0	t0013	916	1	0	0	0	0	1	copy fasta	CHRNA6	chr8	42747620	42773786
CHRNA6_chr8_42747620_42773786	0/0	t0014	916	1	0	0	1	0	0	copy fasta	CHRNA6	chr8	42747620	42773786
CHRNA6_chr8_42747620_42773786	0/0	t0015	916	1	0	0	0	0	1	copy fasta	CHRNA6	chr8	42747620	42773786
CHRNA6_chr8_42747620_42773786	0/0	t0016	917	1	1	0	0	0	0	copy fasta	CHRNA6	chr8	42747620	42773786
CHRNA6_chr8_42747620_42773786	0/0	t0017	917	1	1	0	0	0	0	copy fasta	CHRNA6	chr8	42747620	42773786
CHRNA6_chr8_42747620_42773786	0/0	t0018	917	1	0	0	1	0	0	copy fasta	CHRNA6	chr8	42747620	42773786
CHRNA7_chr15_32025515_32178018	0/1	t0001	4638	83	7	19	41	4	11	copy fasta	CHRNA7	chr15	32025515	32178018
CHRNA7_chr15_32025515_32178018	0/0	t0002	4641	51	5	9	30	2	5	copy fasta	CHRNA7	chr15	32025515	32178018
CHRNA7_chr15_32025515_32178018	0/0	t0003	4639	17	0	3	9	0	5	copy fasta	CHRNA7	chr15	32025515	32178018
CHRNA7_chr15_32025515_32178018	0/0	t0004	4640	13	1	2	9	1	0	copy fasta	CHRNA7	chr15	32025515	32178018
CHRNA7_chr15_32025515_32178018	0/0	t0005	4642	12	6	1	5	0	0	copy fasta	CHRNA7	chr15	32025515	32178018
CHRNA7_chr15_32025515_32178018	0/0	t0006	4643	10	0	1	9	0	0	copy fasta	CHRNA7	chr15	32025515	32178018
CHRNA7_chr15_32025515_32178018	0/0	t0007	4640	9	0	9	0	0	0	copy fasta	CHRNA7	chr15	32025515	32178018
CHRNA7_chr15_32025515_32178018	0/0	t0008	4640	8	7	1	0	0	0	copy fasta	CHRNA7	chr15	32025515	32178018
CHRNA7_chr15_32025515_32178018	0/0	t0009	4640	8	5	3	0	0	0	copy fasta	CHRNA7	chr15	32025515	32178018
CHRNA7_chr15_32025515_32178018	0/0	t0010	4641	6	6	0	0	0	0	copy fasta	CHRNA7	chr15	32025515	32178018
CHRNA7_chr15_32025515_32178018	0/0	t0011	4642	5	0	0	5	0	0	copy fasta	CHRNA7	chr15	32025515	32178018
CHRNA7_chr15_32025515_32178018	0/0	t0012	4639	5	1	2	0	1	1	copy fasta	CHRNA7	chr15	32025515	32178018
CHRNA7_chr15_32025515_32178018	0/0	t0013	4638	5	5	0	0	0	0	copy fasta	CHRNA7	chr15	32025515	32178018
CHRNA7_chr15_32025515_32178018	0/0	t0014	4639	5	0	0	5	0	0	copy fasta	CHRNA7	chr15	32025515	32178018
CHRNA7_chr15_32025515_32178018	0/0	t0015	4639	4	4	0	0	0	0	copy fasta	CHRNA7	chr15	32025515	32178018
CHRNA7_chr15_32025515_32178018	0/0	t0016	4638	4	4	0	0	0	0	copy fasta	CHRNA7	chr15	32025515	32178018
CHRNA7_chr15_32025515_32178018	0/0	t0017	4640	3	3	0	0	0	0	copy fasta	CHRNA7	chr15	32025515	32178018
CHRNA7_chr15_32025515_32178018	0/0	t0018	4641	3	3	0	0	0	0	copy fasta	CHRNA7	chr15	32025515	32178018
CHRNA7_chr15_32025515_32178018	0/0	t0019	4641	3	3	0	0	0	0	copy fasta	CHRNA7	chr15	32025515	32178018
CHRNA7_chr15_32025515_32178018	0/0	t0020	4638	3	0	0	3	0	0	copy fasta	CHRNA7	chr15	32025515	32178018
CHRNA7_chr15_32025515_32178018	0/0	t0021	4640	3	0	1	0	0	2	copy fasta	CHRNA7	chr15	32025515	32178018
CHRNA7_chr15_32025515_32178018	0/0	t0022	4640	3	0	0	3	0	0	copy fasta	CHRNA7	chr15	32025515	32178018
CHRNA7_chr15_32025515_32178018	0/0	t0023	4640	3	0	3	0	0	0	copy fasta	CHRNA7	chr15	32025515	32178018
CHRNA7_chr15_32025515_32178018	0/0	t0024	4640	2	2	0	0	0	0	copy fasta	CHRNA7	chr15	32025515	32178018
CHRNA7_chr15_32025515_32178018	0/0	t0025	4641	2	1	1	0	0	0	copy fasta	CHRNA7	chr15	32025515	32178018
CHRNA7_chr15_32025515_32178018	0/0	t0026	4607	2	2	0	0	0	0	copy fasta	CHRNA7	chr15	32025515	32178018