JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CHRNA7_chr15_32025515_32178018	0/0	t0027	4645	2	0	2	0	0	0	copy fasta	CHRNA7	chr15	32025515	32178018
CHRNA7_chr15_32025515_32178018	0/0	t0028	4641	2	0	0	2	0	0	copy fasta	CHRNA7	chr15	32025515	32178018
CHRNA7_chr15_32025515_32178018	0/0	t0029	4641	2	2	0	0	0	0	copy fasta	CHRNA7	chr15	32025515	32178018
CHRNA7_chr15_32025515_32178018	0/0	t0030	4638	2	1	0	1	0	0	copy fasta	CHRNA7	chr15	32025515	32178018
CHRNA7_chr15_32025515_32178018	0/0	t0031	4640	2	2	0	0	0	0	copy fasta	CHRNA7	chr15	32025515	32178018
CHRNA7_chr15_32025515_32178018	0/0	t0032	4640	2	0	0	2	0	0	copy fasta	CHRNA7	chr15	32025515	32178018
CHRNA7_chr15_32025515_32178018	0/0	t0033	4642	1	0	1	0	0	0	copy fasta	CHRNA7	chr15	32025515	32178018
CHRNA7_chr15_32025515_32178018	0/0	t0034	4607	1	0	0	0	0	1	copy fasta	CHRNA7	chr15	32025515	32178018
CHRNA7_chr15_32025515_32178018	0/0	t0035	4645	1	0	1	0	0	0	copy fasta	CHRNA7	chr15	32025515	32178018
CHRNA7_chr15_32025515_32178018	0/0	t0036	4639	1	0	1	0	0	0	copy fasta	CHRNA7	chr15	32025515	32178018
CHRNA7_chr15_32025515_32178018	0/0	t0037	4640	1	1	0	0	0	0	copy fasta	CHRNA7	chr15	32025515	32178018
CHRNA7_chr15_32025515_32178018	0/0	t0038	4641	1	0	0	1	0	0	copy fasta	CHRNA7	chr15	32025515	32178018
CHRNA7_chr15_32025515_32178018	0/0	t0039	4641	1	1	0	0	0	0	copy fasta	CHRNA7	chr15	32025515	32178018
CHRNA7_chr15_32025515_32178018	0/0	t0040	4606	1	1	0	0	0	0	copy fasta	CHRNA7	chr15	32025515	32178018
CHRNA7_chr15_32025515_32178018	0/0	t0041	4640	1	1	0	0	0	0	copy fasta	CHRNA7	chr15	32025515	32178018
CHRNA7_chr15_32025515_32178018	0/0	t0042	4644	1	0	0	0	0	1	copy fasta	CHRNA7	chr15	32025515	32178018
CHRNA7_chr15_32025515_32178018	0/0	t0043	4638	1	1	0	0	0	0	copy fasta	CHRNA7	chr15	32025515	32178018
CHRNA7_chr15_32025515_32178018	0/0	t0044	4639	1	1	0	0	0	0	copy fasta	CHRNA7	chr15	32025515	32178018
CHRNA7_chr15_32025515_32178018	0/0	t0045	4638	1	0	1	0	0	0	copy fasta	CHRNA7	chr15	32025515	32178018
CHRNA7_chr15_32025515_32178018	0/0	t0046	4640	1	0	1	0	0	0	copy fasta	CHRNA7	chr15	32025515	32178018
CHRNA7_chr15_32025515_32178018	0/0	t0047	4637	1	0	0	1	0	0	copy fasta	CHRNA7	chr15	32025515	32178018
CHRNA7_chr15_32025515_32178018	0/0	t0048	4607	1	0	1	0	0	0	copy fasta	CHRNA7	chr15	32025515	32178018
CHRNA7_chr15_32025515_32178018	0/0	t0049	4643	1	1	0	0	0	0	copy fasta	CHRNA7	chr15	32025515	32178018
CHRNA7_chr15_32025515_32178018	0/0	t0050	4642	1	1	0	0	0	0	copy fasta	CHRNA7	chr15	32025515	32178018
CHRNA7_chr15_32025515_32178018	0/0	t0051	4640	1	1	0	0	0	0	copy fasta	CHRNA7	chr15	32025515	32178018
CHRNA7_chr15_32025515_32178018	0/0	t0052	4641	1	1	0	0	0	0	copy fasta	CHRNA7	chr15	32025515	32178018
CHRNA7_chr15_32025515_32178018	0/0	t0053	4638	1	0	1	0	0	0	copy fasta	CHRNA7	chr15	32025515	32178018
CHRNA7_chr15_32025515_32178018	0/0	t0054	4638	1	1	0	0	0	0	copy fasta	CHRNA7	chr15	32025515	32178018
CHRNA7_chr15_32025515_32178018	0/0	t0055	4640	1	1	0	0	0	0	copy fasta	CHRNA7	chr15	32025515	32178018
CHRNA9_chr4_40330333_40360217	0/1	t0001	833	319	53	48	170	11	36	copy fasta	CHRNA9	chr4	40330333	40360217
CHRNA9_chr4_40330333_40360217	0/0	t0002	833	36	26	6	0	1	3	copy fasta	CHRNA9	chr4	40330333	40360217
CHRNA9_chr4_40330333_40360217	0/0	t0003	833	32	1	13	9	2	7	copy fasta	CHRNA9	chr4	40330333	40360217
CHRNA9_chr4_40330333_40360217	1/0	t0004	833	23	10	11	0	1	0	copy fasta	CHRNA9	chr4	40330333	40360217
CHRNA9_chr4_40330333_40360217	0/0	t0005	833	4	4	0	0	0	0	copy fasta	CHRNA9	chr4	40330333	40360217
CHRNA9_chr4_40330333_40360217	0/0	t0006	833	2	2	0	0	0	0	copy fasta	CHRNA9	chr4	40330333	40360217
CHRNA9_chr4_40330333_40360217	0/0	t0007	833	1	1	0	0	0	0	copy fasta	CHRNA9	chr4	40330333	40360217
CHRNA9_chr4_40330333_40360217	0/0	t0008	833	1	0	0	0	1	0	copy fasta	CHRNA9	chr4	40330333	40360217
CHRNA9_chr4_40330333_40360217	0/0	t0009	833	1	1	0	0	0	0	copy fasta	CHRNA9	chr4	40330333	40360217
CHRNA9_chr4_40330333_40360217	0/0	t0010	833	1	0	0	1	0	0	copy fasta	CHRNA9	chr4	40330333	40360217
CHRNB1_chr17_7440061_7462710	1/1	t0001	1055	153	69	29	29	6	18	copy fasta	CHRNB1	chr17	7440061	7462710
CHRNB1_chr17_7440061_7462710	0/0	t0002	1055	117	10	21	76	1	9	copy fasta	CHRNB1	chr17	7440061	7462710
CHRNB1_chr17_7440061_7462710	0/0	t0003	1055	79	15	18	38	3	5	copy fasta	CHRNB1	chr17	7440061	7462710
CHRNB1_chr17_7440061_7462710	0/0	t0004	1055	7	0	0	1	0	6	copy fasta	CHRNB1	chr17	7440061	7462710
CHRNB1_chr17_7440061_7462710	0/0	t0005	1055	6	0	0	6	0	0	copy fasta	CHRNB1	chr17	7440061	7462710
CHRNB1_chr17_7440061_7462710	0/0	t0006	1055	1	1	0	0	0	0	copy fasta	CHRNB1	chr17	7440061	7462710
CHRNB1_chr17_7440061_7462710	0/0	t0007	1055	1	0	1	0	0	0	copy fasta	CHRNB1	chr17	7440061	7462710
CHRNB1_chr17_7440061_7462710	0/0	t0008	1055	1	0	0	1	0	0	copy fasta	CHRNB1	chr17	7440061	7462710
CHRNB1_chr17_7440061_7462710	0/0	t0009	1055	1	0	0	1	0	0	copy fasta	CHRNB1	chr17	7440061	7462710
CHRNB1_chr17_7440061_7462710	0/0	t0010	1055	1	1	0	0	0	0	copy fasta	CHRNB1	chr17	7440061	7462710
CHRNB1_chr17_7440061_7462710	0/0	t0011	1055	1	0	1	0	0	0	copy fasta	CHRNB1	chr17	7440061	7462710