JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CHRNB2_chr1_154562778_154585013	0/1	t0001	4349	127	5	30	68	9	14	copy fasta	CHRNB2	chr1	154562778	154585013
CHRNB2_chr1_154562778_154585013	0/0	t0002	4347	55	9	10	26	2	8	copy fasta	CHRNB2	chr1	154562778	154585013
CHRNB2_chr1_154562778_154585013	0/0	t0003	4349	47	1	13	26	1	6	copy fasta	CHRNB2	chr1	154562778	154585013
CHRNB2_chr1_154562778_154585013	0/0	t0004	4349	38	6	3	22	0	7	copy fasta	CHRNB2	chr1	154562778	154585013
CHRNB2_chr1_154562778_154585013	0/0	t0005	4345	24	1	2	18	1	2	copy fasta	CHRNB2	chr1	154562778	154585013
CHRNB2_chr1_154562778_154585013	0/0	t0006	4349	21	21	0	0	0	0	copy fasta	CHRNB2	chr1	154562778	154585013
CHRNB2_chr1_154562778_154585013	0/0	t0007	4349	11	0	3	8	0	0	copy fasta	CHRNB2	chr1	154562778	154585013
CHRNB2_chr1_154562778_154585013	0/0	t0008	4349	7	1	6	0	0	0	copy fasta	CHRNB2	chr1	154562778	154585013
CHRNB2_chr1_154562778_154585013	0/0	t0009	4349	6	6	0	0	0	0	copy fasta	CHRNB2	chr1	154562778	154585013
CHRNB2_chr1_154562778_154585013	0/0	t0010	4347	5	1	3	1	0	0	copy fasta	CHRNB2	chr1	154562778	154585013
CHRNB2_chr1_154562778_154585013	0/0	t0011	4349	5	0	4	0	0	1	copy fasta	CHRNB2	chr1	154562778	154585013
CHRNB2_chr1_154562778_154585013	1/0	t0012	4349	5	2	2	0	0	0	copy fasta	CHRNB2	chr1	154562778	154585013
CHRNB2_chr1_154562778_154585013	0/0	t0013	4349	5	0	0	2	0	3	copy fasta	CHRNB2	chr1	154562778	154585013
CHRNB2_chr1_154562778_154585013	0/0	t0014	4347	5	5	0	0	0	0	copy fasta	CHRNB2	chr1	154562778	154585013
CHRNB2_chr1_154562778_154585013	0/0	t0015	4345	4	1	0	2	1	0	copy fasta	CHRNB2	chr1	154562778	154585013
CHRNB2_chr1_154562778_154585013	0/0	t0016	4349	3	3	0	0	0	0	copy fasta	CHRNB2	chr1	154562778	154585013
CHRNB2_chr1_154562778_154585013	0/0	t0017	4349	3	3	0	0	0	0	copy fasta	CHRNB2	chr1	154562778	154585013
CHRNB2_chr1_154562778_154585013	0/0	t0018	4349	3	3	0	0	0	0	copy fasta	CHRNB2	chr1	154562778	154585013
CHRNB2_chr1_154562778_154585013	0/0	t0019	4349	3	3	0	0	0	0	copy fasta	CHRNB2	chr1	154562778	154585013
CHRNB2_chr1_154562778_154585013	0/0	t0020	4345	3	3	0	0	0	0	copy fasta	CHRNB2	chr1	154562778	154585013
CHRNB2_chr1_154562778_154585013	0/0	t0021	4349	2	2	0	0	0	0	copy fasta	CHRNB2	chr1	154562778	154585013
CHRNB2_chr1_154562778_154585013	0/0	t0022	4347	2	0	0	0	2	0	copy fasta	CHRNB2	chr1	154562778	154585013
CHRNB2_chr1_154562778_154585013	0/0	t0023	4349	2	0	2	0	0	0	copy fasta	CHRNB2	chr1	154562778	154585013
CHRNB2_chr1_154562778_154585013	0/0	t0024	4347	2	0	0	1	0	1	copy fasta	CHRNB2	chr1	154562778	154585013
CHRNB2_chr1_154562778_154585013	0/0	t0025	4347	2	1	0	1	0	0	copy fasta	CHRNB2	chr1	154562778	154585013
CHRNB2_chr1_154562778_154585013	0/0	t0026	4349	2	2	0	0	0	0	copy fasta	CHRNB2	chr1	154562778	154585013
CHRNB2_chr1_154562778_154585013	0/0	t0027	4347	2	2	0	0	0	0	copy fasta	CHRNB2	chr1	154562778	154585013
CHRNB2_chr1_154562778_154585013	0/0	t0028	4349	2	0	0	2	0	0	copy fasta	CHRNB2	chr1	154562778	154585013
CHRNB2_chr1_154562778_154585013	0/0	t0029	4349	2	2	0	0	0	0	copy fasta	CHRNB2	chr1	154562778	154585013
CHRNB2_chr1_154562778_154585013	0/0	t0030	4349	1	0	0	0	0	1	copy fasta	CHRNB2	chr1	154562778	154585013
CHRNB2_chr1_154562778_154585013	0/0	t0031	4347	1	1	0	0	0	0	copy fasta	CHRNB2	chr1	154562778	154585013
CHRNB2_chr1_154562778_154585013	0/0	t0032	4349	1	0	0	1	0	0	copy fasta	CHRNB2	chr1	154562778	154585013
CHRNB2_chr1_154562778_154585013	0/0	t0033	4349	1	0	0	1	0	0	copy fasta	CHRNB2	chr1	154562778	154585013
CHRNB2_chr1_154562778_154585013	0/0	t0034	4349	1	0	0	1	0	0	copy fasta	CHRNB2	chr1	154562778	154585013
CHRNB2_chr1_154562778_154585013	0/0	t0035	4349	1	0	1	0	0	0	copy fasta	CHRNB2	chr1	154562778	154585013
CHRNB2_chr1_154562778_154585013	0/0	t0036	4349	1	1	0	0	0	0	copy fasta	CHRNB2	chr1	154562778	154585013
CHRNB2_chr1_154562778_154585013	0/0	t0037	4349	1	0	1	0	0	0	copy fasta	CHRNB2	chr1	154562778	154585013
CHRNB2_chr1_154562778_154585013	0/0	t0038	4347	1	0	0	1	0	0	copy fasta	CHRNB2	chr1	154562778	154585013
CHRNB2_chr1_154562778_154585013	0/0	t0039	4347	1	0	1	0	0	0	copy fasta	CHRNB2	chr1	154562778	154585013
CHRNB2_chr1_154562778_154585013	0/0	t0040	4347	1	0	0	1	0	0	copy fasta	CHRNB2	chr1	154562778	154585013
CHRNB2_chr1_154562778_154585013	0/0	t0041	4347	1	0	0	0	0	1	copy fasta	CHRNB2	chr1	154562778	154585013
CHRNB2_chr1_154562778_154585013	0/0	t0042	4349	1	0	1	0	0	0	copy fasta	CHRNB2	chr1	154562778	154585013
CHRNB2_chr1_154562778_154585013	0/0	t0043	4349	1	0	0	0	0	1	copy fasta	CHRNB2	chr1	154562778	154585013
CHRNB2_chr1_154562778_154585013	0/0	t0044	4349	1	0	0	1	0	0	copy fasta	CHRNB2	chr1	154562778	154585013
CHRNB2_chr1_154562778_154585013	0/0	t0045	4349	1	0	0	1	0	0	copy fasta	CHRNB2	chr1	154562778	154585013
CHRNB2_chr1_154562778_154585013	0/0	t0046	4345	1	0	0	1	0	0	copy fasta	CHRNB2	chr1	154562778	154585013
CHRNB2_chr1_154562778_154585013	0/0	t0047	4345	1	0	0	1	0	0	copy fasta	CHRNB2	chr1	154562778	154585013
CHRNB2_chr1_154562778_154585013	0/0	t0048	4349	1	1	0	0	0	0	copy fasta	CHRNB2	chr1	154562778	154585013
CHRNB2_chr1_154562778_154585013	0/0	t0049	4349	1	1	0	0	0	0	copy fasta	CHRNB2	chr1	154562778	154585013
CHRNB2_chr1_154562778_154585013	0/0	t0050	4349	1	0	0	0	0	1	copy fasta	CHRNB2	chr1	154562778	154585013