JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CHRNB2_chr1_154562778_154585013	0/0	t0051	4345	1	1	0	0	0	0	copy fasta	CHRNB2	chr1	154562778	154585013
CHRNB2_chr1_154562778_154585013	0/0	t0052	4349	1	0	0	0	0	1	copy fasta	CHRNB2	chr1	154562778	154585013
CHRNB2_chr1_154562778_154585013	0/0	t0053	4349	1	0	0	0	0	1	copy fasta	CHRNB2	chr1	154562778	154585013
CHRNB2_chr1_154562778_154585013	0/0	t0054	4349	1	1	0	0	0	0	copy fasta	CHRNB2	chr1	154562778	154585013
CHRNB2_chr1_154562778_154585013	0/0	t0055	4349	1	1	0	0	0	0	copy fasta	CHRNB2	chr1	154562778	154585013
CHRNB3_chr8_42692366_42742407	0/0	t0001	971	133	60	27	32	2	12	copy fasta	CHRNB3	chr8	42692366	42742407
CHRNB3_chr8_42692366_42742407	0/1	t0002	971	107	10	19	60	2	15	copy fasta	CHRNB3	chr8	42692366	42742407
CHRNB3_chr8_42692366_42742407	0/0	t0003	971	12	11	1	0	0	0	copy fasta	CHRNB3	chr8	42692366	42742407
CHRNB3_chr8_42692366_42742407	0/0	t0004	971	9	9	0	0	0	0	copy fasta	CHRNB3	chr8	42692366	42742407
CHRNB3_chr8_42692366_42742407	0/0	t0005	971	6	0	4	0	1	1	copy fasta	CHRNB3	chr8	42692366	42742407
CHRNB3_chr8_42692366_42742407	0/0	t0006	971	6	0	2	0	3	1	copy fasta	CHRNB3	chr8	42692366	42742407
CHRNB3_chr8_42692366_42742407	0/0	t0007	971	3	3	0	0	0	0	copy fasta	CHRNB3	chr8	42692366	42742407
CHRNB3_chr8_42692366_42742407	0/0	t0008	971	1	1	0	0	0	0	copy fasta	CHRNB3	chr8	42692366	42742407
CHRNB3_chr8_42692366_42742407	0/0	t0009	971	1	0	1	0	0	0	copy fasta	CHRNB3	chr8	42692366	42742407
CHRNB3_chr8_42692366_42742407	0/0	t0010	971	1	1	0	0	0	0	copy fasta	CHRNB3	chr8	42692366	42742407
CHRNB3_chr8_42692366_42742407	0/0	t0011	971	1	1	0	0	0	0	copy fasta	CHRNB3	chr8	42692366	42742407
CHRNB3_chr8_42692366_42742407	1/0	t0012	971	1	0	0	0	0	0	copy fasta	CHRNB3	chr8	42692366	42742407
CHRNB3_chr8_42692366_42742407	0/0	t0013	971	1	0	0	0	0	1	copy fasta	CHRNB3	chr8	42692366	42742407
CHRNB4_chr15_78619111_78646210	0/1	t0001	1100	228	47	54	94	9	23	copy fasta	CHRNB4	chr15	78619111	78646210
CHRNB4_chr15_78619111_78646210	1/0	t0002	1100	81	12	13	38	5	12	copy fasta	CHRNB4	chr15	78619111	78646210
CHRNB4_chr15_78619111_78646210	0/0	t0003	1100	67	6	0	61	0	0	copy fasta	CHRNB4	chr15	78619111	78646210
CHRNB4_chr15_78619111_78646210	0/0	t0004	1101	8	8	0	0	0	0	copy fasta	CHRNB4	chr15	78619111	78646210
CHRNB4_chr15_78619111_78646210	0/0	t0005	1097	6	5	1	0	0	0	copy fasta	CHRNB4	chr15	78619111	78646210
CHRNB4_chr15_78619111_78646210	0/0	t0006	1100	4	0	1	0	2	1	copy fasta	CHRNB4	chr15	78619111	78646210
CHRNB4_chr15_78619111_78646210	0/0	t0007	1100	4	4	0	0	0	0	copy fasta	CHRNB4	chr15	78619111	78646210
CHRNB4_chr15_78619111_78646210	0/0	t0008	1100	4	0	0	4	0	0	copy fasta	CHRNB4	chr15	78619111	78646210
CHRNB4_chr15_78619111_78646210	0/0	t0009	1100	3	3	0	0	0	0	copy fasta	CHRNB4	chr15	78619111	78646210
CHRNB4_chr15_78619111_78646210	0/0	t0010	1100	2	2	0	0	0	0	copy fasta	CHRNB4	chr15	78619111	78646210
CHRNB4_chr15_78619111_78646210	0/0	t0011	1100	2	0	2	0	0	0	copy fasta	CHRNB4	chr15	78619111	78646210
CHRNB4_chr15_78619111_78646210	0/0	t0012	1100	1	0	0	1	0	0	copy fasta	CHRNB4	chr15	78619111	78646210
CHRNB4_chr15_78619111_78646210	0/0	t0013	1100	1	0	0	1	0	0	copy fasta	CHRNB4	chr15	78619111	78646210
CHRNB4_chr15_78619111_78646210	0/0	t0014	1101	1	1	0	0	0	0	copy fasta	CHRNB4	chr15	78619111	78646210
CHRNB4_chr15_78619111_78646210	0/0	t0015	1101	1	1	0	0	0	0	copy fasta	CHRNB4	chr15	78619111	78646210
CHRNB4_chr15_78619111_78646210	0/0	t0016	1100	1	1	0	0	0	0	copy fasta	CHRNB4	chr15	78619111	78646210
CHRNB4_chr15_78619111_78646210	0/0	t0017	1100	1	0	1	0	0	0	copy fasta	CHRNB4	chr15	78619111	78646210
CHRNB4_chr15_78619111_78646210	0/0	t0018	1100	1	0	0	1	0	0	copy fasta	CHRNB4	chr15	78619111	78646210
CHRND_chr2_232521160_232541664	1/1	t0001	1409	225	70	34	82	8	29	copy fasta	CHRND	chr2	232521160	232541664
CHRND_chr2_232521160_232541664	0/0	t0002	1409	132	23	20	74	2	13	copy fasta	CHRND	chr2	232521160	232541664
CHRND_chr2_232521160_232541664	0/0	t0003	1409	35	0	1	32	1	1	copy fasta	CHRND	chr2	232521160	232541664
CHRND_chr2_232521160_232541664	0/0	t0004	1409	31	2	5	17	3	4	copy fasta	CHRND	chr2	232521160	232541664
CHRND_chr2_232521160_232541664	0/0	t0005	1409	6	0	2	0	3	1	copy fasta	CHRND	chr2	232521160	232541664
CHRND_chr2_232521160_232541664	0/0	t0006	1409	3	0	2	0	1	0	copy fasta	CHRND	chr2	232521160	232541664
CHRND_chr2_232521160_232541664	0/0	t0007	1409	1	0	0	1	0	0	copy fasta	CHRND	chr2	232521160	232541664
CHRND_chr2_232521160_232541664	0/0	t0008	1409	1	0	0	1	0	0	copy fasta	CHRND	chr2	232521160	232541664
CHRND_chr2_232521160_232541664	0/0	t0009	1409	1	1	0	0	0	0	copy fasta	CHRND	chr2	232521160	232541664
CHRND_chr2_232521160_232541664	0/0	t0010	1409	1	0	0	1	0	0	copy fasta	CHRND	chr2	232521160	232541664
CHRND_chr2_232521160_232541664	0/0	t0011	1409	1	0	0	1	0	0	copy fasta	CHRND	chr2	232521160	232541664
CHRND_chr2_232521160_232541664	0/0	t0012	1409	1	0	0	1	0	0	copy fasta	CHRND	chr2	232521160	232541664
CHRNE_chr17_4892771_4908098	0/0	t0001	1004	58	1	1	43	1	12	copy fasta	CHRNE	chr17	4892771	4908098
CHRNE_chr17_4892771_4908098	0/0	t0002	1004	58	13	16	21	3	5	copy fasta	CHRNE	chr17	4892771	4908098