JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CHRNE_chr17_4892771_4908098	0/0	t0003	1004	56	5	19	13	5	14	copy fasta	CHRNE	chr17	4892771	4908098
CHRNE_chr17_4892771_4908098	0/0	t0004	1001	23	2	2	18	1	0	copy fasta	CHRNE	chr17	4892771	4908098
CHRNE_chr17_4892771_4908098	0/0	t0005	1004	21	0	6	11	3	1	copy fasta	CHRNE	chr17	4892771	4908098
CHRNE_chr17_4892771_4908098	0/0	t0006	1004	20	11	3	6	0	0	copy fasta	CHRNE	chr17	4892771	4908098
CHRNE_chr17_4892771_4908098	0/0	t0007	1004	16	2	1	13	0	0	copy fasta	CHRNE	chr17	4892771	4908098
CHRNE_chr17_4892771_4908098	0/0	t0008	1004	16	0	8	8	0	0	copy fasta	CHRNE	chr17	4892771	4908098
CHRNE_chr17_4892771_4908098	0/0	t0009	1004	13	0	0	11	0	2	copy fasta	CHRNE	chr17	4892771	4908098
CHRNE_chr17_4892771_4908098	0/0	t0010	1001	13	0	3	8	0	2	copy fasta	CHRNE	chr17	4892771	4908098
CHRNE_chr17_4892771_4908098	0/0	t0011	1004	12	9	3	0	0	0	copy fasta	CHRNE	chr17	4892771	4908098
CHRNE_chr17_4892771_4908098	0/0	t0012	1001	9	8	1	0	0	0	copy fasta	CHRNE	chr17	4892771	4908098
CHRNE_chr17_4892771_4908098	0/0	t0013	1004	9	0	0	9	0	0	copy fasta	CHRNE	chr17	4892771	4908098
CHRNE_chr17_4892771_4908098	0/0	t0014	1004	8	0	4	0	1	3	copy fasta	CHRNE	chr17	4892771	4908098
CHRNE_chr17_4892771_4908098	0/0	t0015	1004	7	0	0	7	0	0	copy fasta	CHRNE	chr17	4892771	4908098
CHRNE_chr17_4892771_4908098	0/0	t0016	1004	6	6	0	0	0	0	copy fasta	CHRNE	chr17	4892771	4908098
CHRNE_chr17_4892771_4908098	0/0	t0017	1004	6	6	0	0	0	0	copy fasta	CHRNE	chr17	4892771	4908098
CHRNE_chr17_4892771_4908098	0/0	t0018	1001	6	2	0	4	0	0	copy fasta	CHRNE	chr17	4892771	4908098
CHRNE_chr17_4892771_4908098	0/0	t0019	1004	5	0	0	5	0	0	copy fasta	CHRNE	chr17	4892771	4908098
CHRNE_chr17_4892771_4908098	0/1	t0020	1004	5	0	2	0	2	0	copy fasta	CHRNE	chr17	4892771	4908098
CHRNE_chr17_4892771_4908098	0/0	t0021	1004	5	5	0	0	0	0	copy fasta	CHRNE	chr17	4892771	4908098
CHRNE_chr17_4892771_4908098	0/0	t0022	1004	3	3	0	0	0	0	copy fasta	CHRNE	chr17	4892771	4908098
CHRNE_chr17_4892771_4908098	0/0	t0023	1004	3	3	0	0	0	0	copy fasta	CHRNE	chr17	4892771	4908098
CHRNE_chr17_4892771_4908098	0/0	t0024	1004	3	0	0	3	0	0	copy fasta	CHRNE	chr17	4892771	4908098
CHRNE_chr17_4892771_4908098	0/0	t0025	1001	3	0	0	3	0	0	copy fasta	CHRNE	chr17	4892771	4908098
CHRNE_chr17_4892771_4908098	0/0	t0026	1004	3	0	0	3	0	0	copy fasta	CHRNE	chr17	4892771	4908098
CHRNE_chr17_4892771_4908098	0/0	t0027	1004	3	0	0	3	0	0	copy fasta	CHRNE	chr17	4892771	4908098
CHRNE_chr17_4892771_4908098	0/0	t0028	1004	3	0	1	2	0	0	copy fasta	CHRNE	chr17	4892771	4908098
CHRNE_chr17_4892771_4908098	0/0	t0029	1004	3	0	0	3	0	0	copy fasta	CHRNE	chr17	4892771	4908098
CHRNE_chr17_4892771_4908098	0/0	t0030	1004	2	0	2	0	0	0	copy fasta	CHRNE	chr17	4892771	4908098
CHRNE_chr17_4892771_4908098	0/0	t0031	1001	2	2	0	0	0	0	copy fasta	CHRNE	chr17	4892771	4908098
CHRNE_chr17_4892771_4908098	0/0	t0032	1004	2	0	0	2	0	0	copy fasta	CHRNE	chr17	4892771	4908098
CHRNE_chr17_4892771_4908098	0/0	t0033	1004	2	0	1	1	0	0	copy fasta	CHRNE	chr17	4892771	4908098
CHRNE_chr17_4892771_4908098	0/0	t0034	1004	2	2	0	0	0	0	copy fasta	CHRNE	chr17	4892771	4908098
CHRNE_chr17_4892771_4908098	0/0	t0035	1004	2	0	0	2	0	0	copy fasta	CHRNE	chr17	4892771	4908098
CHRNE_chr17_4892771_4908098	1/0	t0036	1001	2	1	0	0	0	0	copy fasta	CHRNE	chr17	4892771	4908098
CHRNE_chr17_4892771_4908098	0/0	t0037	1001	2	0	0	2	0	0	copy fasta	CHRNE	chr17	4892771	4908098
CHRNE_chr17_4892771_4908098	0/0	t0038	1001	2	0	0	2	0	0	copy fasta	CHRNE	chr17	4892771	4908098
CHRNE_chr17_4892771_4908098	0/0	t0039	1004	2	0	1	1	0	0	copy fasta	CHRNE	chr17	4892771	4908098
CHRNE_chr17_4892771_4908098	0/0	t0040	1001	2	0	0	2	0	0	copy fasta	CHRNE	chr17	4892771	4908098
CHRNE_chr17_4892771_4908098	0/0	t0041	1004	1	1	0	0	0	0	copy fasta	CHRNE	chr17	4892771	4908098
CHRNE_chr17_4892771_4908098	0/0	t0042	1004	1	1	0	0	0	0	copy fasta	CHRNE	chr17	4892771	4908098
CHRNE_chr17_4892771_4908098	0/0	t0043	1001	1	1	0	0	0	0	copy fasta	CHRNE	chr17	4892771	4908098
CHRNE_chr17_4892771_4908098	0/0	t0044	1001	1	1	0	0	0	0	copy fasta	CHRNE	chr17	4892771	4908098
CHRNE_chr17_4892771_4908098	0/0	t0045	1004	1	1	0	0	0	0	copy fasta	CHRNE	chr17	4892771	4908098
CHRNE_chr17_4892771_4908098	0/0	t0046	1004	1	1	0	0	0	0	copy fasta	CHRNE	chr17	4892771	4908098
CHRNE_chr17_4892771_4908098	0/0	t0047	1004	1	0	1	0	0	0	copy fasta	CHRNE	chr17	4892771	4908098
CHRNE_chr17_4892771_4908098	0/0	t0048	1004	1	0	0	0	0	1	copy fasta	CHRNE	chr17	4892771	4908098
CHRNE_chr17_4892771_4908098	0/0	t0049	1004	1	1	0	0	0	0	copy fasta	CHRNE	chr17	4892771	4908098
CHRNE_chr17_4892771_4908098	0/0	t0050	1004	1	0	0	0	0	1	copy fasta	CHRNE	chr17	4892771	4908098
CHRNE_chr17_4892771_4908098	0/0	t0051	1004	1	0	0	1	0	0	copy fasta	CHRNE	chr17	4892771	4908098
CHRNE_chr17_4892771_4908098	0/0	t0052	1004	1	0	1	0	0	0	copy fasta	CHRNE	chr17	4892771	4908098