JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CHRNE_chr17_4892771_4908098	0/0	t0053	1004	1	1	0	0	0	0	copy fasta	CHRNE	chr17	4892771	4908098
CHRNE_chr17_4892771_4908098	0/0	t0054	1004	1	1	0	0	0	0	copy fasta	CHRNE	chr17	4892771	4908098
CHRNE_chr17_4892771_4908098	0/0	t0055	1004	1	1	0	0	0	0	copy fasta	CHRNE	chr17	4892771	4908098
CHRNE_chr17_4892771_4908098	0/0	t0056	1004	1	0	1	0	0	0	copy fasta	CHRNE	chr17	4892771	4908098
CHRNE_chr17_4892771_4908098	0/0	t0057	1004	1	0	0	0	0	1	copy fasta	CHRNE	chr17	4892771	4908098
CHRNE_chr17_4892771_4908098	0/0	t0058	1004	1	0	0	1	0	0	copy fasta	CHRNE	chr17	4892771	4908098
CHRNE_chr17_4892771_4908098	0/0	t0059	1004	1	0	0	1	0	0	copy fasta	CHRNE	chr17	4892771	4908098
CHRNE_chr17_4892771_4908098	0/0	t0060	1004	1	0	0	0	0	1	copy fasta	CHRNE	chr17	4892771	4908098
CHRNE_chr17_4892771_4908098	0/0	t0061	1004	1	0	0	0	0	1	copy fasta	CHRNE	chr17	4892771	4908098
CHRNE_chr17_4892771_4908098	0/0	t0062	1004	1	1	0	0	0	0	copy fasta	CHRNE	chr17	4892771	4908098
CHRNE_chr17_4892771_4908098	0/0	t0063	1004	1	0	0	1	0	0	copy fasta	CHRNE	chr17	4892771	4908098
CHRNE_chr17_4892771_4908098	0/0	t0064	1001	1	1	0	0	0	0	copy fasta	CHRNE	chr17	4892771	4908098
CHRNE_chr17_4892771_4908098	0/0	t0065	1001	1	0	1	0	0	0	copy fasta	CHRNE	chr17	4892771	4908098
CHRNE_chr17_4892771_4908098	0/0	t0066	1004	1	1	0	0	0	0	copy fasta	CHRNE	chr17	4892771	4908098
CHRNE_chr17_4892771_4908098	0/0	t0067	1004	1	1	0	0	0	0	copy fasta	CHRNE	chr17	4892771	4908098
CHRNE_chr17_4892771_4908098	0/0	t0068	1004	1	1	0	0	0	0	copy fasta	CHRNE	chr17	4892771	4908098
CHRNG_chr2_232534692_232553115	1/0	t0001	2456	127	38	22	47	3	16	copy fasta	CHRNG	chr2	232534692	232553115
CHRNG_chr2_232534692_232553115	0/0	t0002	2465	94	3	18	54	5	14	copy fasta	CHRNG	chr2	232534692	232553115
CHRNG_chr2_232534692_232553115	0/1	t0003	2456	65	15	10	28	1	10	copy fasta	CHRNG	chr2	232534692	232553115
CHRNG_chr2_232534692_232553115	0/0	t0004	2465	32	0	1	30	0	1	copy fasta	CHRNG	chr2	232534692	232553115
CHRNG_chr2_232534692_232553115	0/0	t0005	2455	24	10	5	5	4	0	copy fasta	CHRNG	chr2	232534692	232553115
CHRNG_chr2_232534692_232553115	0/0	t0006	2467	23	7	1	12	1	2	copy fasta	CHRNG	chr2	232534692	232553115
CHRNG_chr2_232534692_232553115	0/0	t0007	2457	13	3	1	8	0	1	copy fasta	CHRNG	chr2	232534692	232553115
CHRNG_chr2_232534692_232553115	0/0	t0008	2464	11	1	3	6	0	1	copy fasta	CHRNG	chr2	232534692	232553115
CHRNG_chr2_232534692_232553115	0/0	t0009	2466	9	2	0	5	1	1	copy fasta	CHRNG	chr2	232534692	232553115
CHRNG_chr2_232534692_232553115	0/0	t0010	2467	5	4	0	1	0	0	copy fasta	CHRNG	chr2	232534692	232553115
CHRNG_chr2_232534692_232553115	0/0	t0011	2467	4	4	0	0	0	0	copy fasta	CHRNG	chr2	232534692	232553115
CHRNG_chr2_232534692_232553115	0/0	t0012	2463	3	2	1	0	0	0	copy fasta	CHRNG	chr2	232534692	232553115
CHRNG_chr2_232534692_232553115	0/0	t0013	2466	3	3	0	0	0	0	copy fasta	CHRNG	chr2	232534692	232553115
CHRNG_chr2_232534692_232553115	0/0	t0014	2456	3	0	0	0	0	3	copy fasta	CHRNG	chr2	232534692	232553115
CHRNG_chr2_232534692_232553115	0/0	t0015	2464	2	0	0	2	0	0	copy fasta	CHRNG	chr2	232534692	232553115
CHRNG_chr2_232534692_232553115	0/0	t0016	2466	2	0	0	2	0	0	copy fasta	CHRNG	chr2	232534692	232553115
CHRNG_chr2_232534692_232553115	0/0	t0017	2456	2	0	2	0	0	0	copy fasta	CHRNG	chr2	232534692	232553115
CHRNG_chr2_232534692_232553115	0/0	t0018	2465	1	0	0	0	1	0	copy fasta	CHRNG	chr2	232534692	232553115
CHRNG_chr2_232534692_232553115	0/0	t0019	2465	1	0	0	1	0	0	copy fasta	CHRNG	chr2	232534692	232553115
CHRNG_chr2_232534692_232553115	0/0	t0020	2456	1	0	0	1	0	0	copy fasta	CHRNG	chr2	232534692	232553115
CHRNG_chr2_232534692_232553115	0/0	t0021	2465	1	1	0	0	0	0	copy fasta	CHRNG	chr2	232534692	232553115
CHRNG_chr2_232534692_232553115	0/0	t0022	2463	1	0	1	0	0	0	copy fasta	CHRNG	chr2	232534692	232553115
CHRNG_chr2_232534692_232553115	0/0	t0023	2456	1	0	0	0	0	1	copy fasta	CHRNG	chr2	232534692	232553115
CHRNG_chr2_232534692_232553115	0/0	t0024	2457	1	0	0	1	0	0	copy fasta	CHRNG	chr2	232534692	232553115
CHRNG_chr2_232534692_232553115	0/0	t0025	2465	1	0	1	0	0	0	copy fasta	CHRNG	chr2	232534692	232553115
CHRNG_chr2_232534692_232553115	0/0	t0026	2465	1	1	0	0	0	0	copy fasta	CHRNG	chr2	232534692	232553115
CHRNG_chr2_232534692_232553115	0/0	t0027	2456	1	0	0	0	1	0	copy fasta	CHRNG	chr2	232534692	232553115
CHRNG_chr2_232534692_232553115	0/0	t0028	2455	1	0	0	0	1	0	copy fasta	CHRNG	chr2	232534692	232553115
CHRNG_chr2_232534692_232553115	0/0	t0029	2456	1	0	0	1	0	0	copy fasta	CHRNG	chr2	232534692	232553115
CHST10_chr2_100386860_100422668	1/0	t0001	1784	118	24	33	36	5	19	copy fasta	CHST10	chr2	100386860	100422668
CHST10_chr2_100386860_100422668	0/1	t0002	1784	100	1	20	62	7	9	copy fasta	CHST10	chr2	100386860	100422668
CHST10_chr2_100386860_100422668	0/0	t0003	1784	39	16	10	5	0	8	copy fasta	CHST10	chr2	100386860	100422668
CHST10_chr2_100386860_100422668	0/0	t0004	1784	23	22	0	0	1	0	copy fasta	CHST10	chr2	100386860	100422668
CHST10_chr2_100386860_100422668	0/0	t0005	1784	21	15	3	3	0	0	copy fasta	CHST10	chr2	100386860	100422668