JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CHST10_chr2_100386860_100422668	0/0	t0006	1784	13	7	0	6	0	0	copy fasta	CHST10	chr2	100386860	100422668
CHST10_chr2_100386860_100422668	0/0	t0007	1784	11	0	0	11	0	0	copy fasta	CHST10	chr2	100386860	100422668
CHST10_chr2_100386860_100422668	0/0	t0008	1784	9	0	0	9	0	0	copy fasta	CHST10	chr2	100386860	100422668
CHST10_chr2_100386860_100422668	0/0	t0009	1784	3	3	0	0	0	0	copy fasta	CHST10	chr2	100386860	100422668
CHST10_chr2_100386860_100422668	0/0	t0010	1784	2	2	0	0	0	0	copy fasta	CHST10	chr2	100386860	100422668
CHST10_chr2_100386860_100422668	0/0	t0011	1784	2	0	0	2	0	0	copy fasta	CHST10	chr2	100386860	100422668
CHST10_chr2_100386860_100422668	0/0	t0012	1784	2	0	2	0	0	0	copy fasta	CHST10	chr2	100386860	100422668
CHST10_chr2_100386860_100422668	0/0	t0013	1784	2	0	0	2	0	0	copy fasta	CHST10	chr2	100386860	100422668
CHST10_chr2_100386860_100422668	0/0	t0014	1784	2	0	0	0	0	2	copy fasta	CHST10	chr2	100386860	100422668
CHST10_chr2_100386860_100422668	0/0	t0015	1784	2	0	0	0	1	1	copy fasta	CHST10	chr2	100386860	100422668
CHST10_chr2_100386860_100422668	0/0	t0016	1784	2	2	0	0	0	0	copy fasta	CHST10	chr2	100386860	100422668
CHST10_chr2_100386860_100422668	0/0	t0017	1784	1	0	0	1	0	0	copy fasta	CHST10	chr2	100386860	100422668
CHST10_chr2_100386860_100422668	0/0	t0018	1784	1	0	0	1	0	0	copy fasta	CHST10	chr2	100386860	100422668
CHST10_chr2_100386860_100422668	0/0	t0019	1784	1	0	0	0	0	1	copy fasta	CHST10	chr2	100386860	100422668
CHST10_chr2_100386860_100422668	0/0	t0020	1784	1	0	0	1	0	0	copy fasta	CHST10	chr2	100386860	100422668
CHST10_chr2_100386860_100422668	0/0	t0021	1784	1	0	1	0	0	0	copy fasta	CHST10	chr2	100386860	100422668
CHST10_chr2_100386860_100422668	0/0	t0022	1784	1	1	0	0	0	0	copy fasta	CHST10	chr2	100386860	100422668
CHST10_chr2_100386860_100422668	0/0	t0023	1784	1	0	0	1	0	0	copy fasta	CHST10	chr2	100386860	100422668
CHST10_chr2_100386860_100422668	0/0	t0024	1784	1	0	0	1	0	0	copy fasta	CHST10	chr2	100386860	100422668
CHST10_chr2_100386860_100422668	0/0	t0025	1784	1	0	0	1	0	0	copy fasta	CHST10	chr2	100386860	100422668
CHST10_chr2_100386860_100422668	0/0	t0026	1784	1	0	1	0	0	0	copy fasta	CHST10	chr2	100386860	100422668
CHST10_chr2_100386860_100422668	0/0	t0027	1784	1	1	0	0	0	0	copy fasta	CHST10	chr2	100386860	100422668
CHST10_chr2_100386860_100422668	0/0	t0028	1784	1	1	0	0	0	0	copy fasta	CHST10	chr2	100386860	100422668
CHST10_chr2_100386860_100422668	0/0	t0029	1784	1	1	0	0	0	0	copy fasta	CHST10	chr2	100386860	100422668
CHST11_chr12_104451948_104767014	0/0	t0001	4671	47	8	13	18	4	4	copy fasta	CHST11	chr12	104451948	104767014
CHST11_chr12_104451948_104767014	0/0	t0002	4673	28	10	8	4	1	5	copy fasta	CHST11	chr12	104451948	104767014
CHST11_chr12_104451948_104767014	0/0	t0003	4678	27	2	7	9	1	8	copy fasta	CHST11	chr12	104451948	104767014
CHST11_chr12_104451948_104767014	0/0	t0004	4677	9	0	0	9	0	0	copy fasta	CHST11	chr12	104451948	104767014
CHST11_chr12_104451948_104767014	1/0	t0005	4676	7	0	2	1	2	1	copy fasta	CHST11	chr12	104451948	104767014
CHST11_chr12_104451948_104767014	0/0	t0006	4680	6	0	2	2	0	2	copy fasta	CHST11	chr12	104451948	104767014
CHST11_chr12_104451948_104767014	0/0	t0007	4672	6	1	3	0	0	2	copy fasta	CHST11	chr12	104451948	104767014
CHST11_chr12_104451948_104767014	0/0	t0008	4675	5	0	1	0	0	4	copy fasta	CHST11	chr12	104451948	104767014
CHST11_chr12_104451948_104767014	0/0	t0009	4684	4	0	0	3	0	1	copy fasta	CHST11	chr12	104451948	104767014
CHST11_chr12_104451948_104767014	0/0	t0010	4687	4	0	0	4	0	0	copy fasta	CHST11	chr12	104451948	104767014
CHST11_chr12_104451948_104767014	0/0	t0011	4691	4	1	0	3	0	0	copy fasta	CHST11	chr12	104451948	104767014
CHST11_chr12_104451948_104767014	0/0	t0012	4684	3	3	0	0	0	0	copy fasta	CHST11	chr12	104451948	104767014
CHST11_chr12_104451948_104767014	0/0	t0013	4671	3	3	0	0	0	0	copy fasta	CHST11	chr12	104451948	104767014
CHST11_chr12_104451948_104767014	0/0	t0014	4673	3	2	0	1	0	0	copy fasta	CHST11	chr12	104451948	104767014
CHST11_chr12_104451948_104767014	0/0	t0015	4689	3	2	1	0	0	0	copy fasta	CHST11	chr12	104451948	104767014
CHST11_chr12_104451948_104767014	0/0	t0016	4686	3	0	0	3	0	0	copy fasta	CHST11	chr12	104451948	104767014
CHST11_chr12_104451948_104767014	0/0	t0017	4686	3	3	0	0	0	0	copy fasta	CHST11	chr12	104451948	104767014
CHST11_chr12_104451948_104767014	0/0	t0018	4688	3	3	0	0	0	0	copy fasta	CHST11	chr12	104451948	104767014
CHST11_chr12_104451948_104767014	0/1	t0019	4678	3	0	1	0	0	1	copy fasta	CHST11	chr12	104451948	104767014
CHST11_chr12_104451948_104767014	0/0	t0020	4673	3	0	2	0	0	1	copy fasta	CHST11	chr12	104451948	104767014
CHST11_chr12_104451948_104767014	0/0	t0021	4677	2	0	0	1	0	1	copy fasta	CHST11	chr12	104451948	104767014
CHST11_chr12_104451948_104767014	0/0	t0022	4688	2	2	0	0	0	0	copy fasta	CHST11	chr12	104451948	104767014
CHST11_chr12_104451948_104767014	0/0	t0023	4685	2	2	0	0	0	0	copy fasta	CHST11	chr12	104451948	104767014
CHST11_chr12_104451948_104767014	0/0	t0024	4691	2	1	0	1	0	0	copy fasta	CHST11	chr12	104451948	104767014
CHST11_chr12_104451948_104767014	0/0	t0025	4688	2	2	0	0	0	0	copy fasta	CHST11	chr12	104451948	104767014
CHST11_chr12_104451948_104767014	0/0	t0026	4679	2	0	0	2	0	0	copy fasta	CHST11	chr12	104451948	104767014