JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CHST11_chr12_104451948_104767014	0/0	t0027	4690	2	2	0	0	0	0	copy fasta	CHST11	chr12	104451948	104767014
CHST11_chr12_104451948_104767014	0/0	t0028	4684	2	2	0	0	0	0	copy fasta	CHST11	chr12	104451948	104767014
CHST11_chr12_104451948_104767014	0/0	t0029	4685	2	2	0	0	0	0	copy fasta	CHST11	chr12	104451948	104767014
CHST11_chr12_104451948_104767014	0/0	t0030	4689	2	0	0	2	0	0	copy fasta	CHST11	chr12	104451948	104767014
CHST11_chr12_104451948_104767014	0/0	t0031	4693	2	0	0	2	0	0	copy fasta	CHST11	chr12	104451948	104767014
CHST11_chr12_104451948_104767014	0/0	t0032	4673	2	0	2	0	0	0	copy fasta	CHST11	chr12	104451948	104767014
CHST11_chr12_104451948_104767014	0/0	t0033	4671	2	2	0	0	0	0	copy fasta	CHST11	chr12	104451948	104767014
CHST11_chr12_104451948_104767014	0/0	t0034	4678	2	0	0	1	0	1	copy fasta	CHST11	chr12	104451948	104767014
CHST11_chr12_104451948_104767014	0/0	t0035	4671	2	0	0	1	0	1	copy fasta	CHST11	chr12	104451948	104767014
CHST11_chr12_104451948_104767014	0/0	t0036	4673	1	0	0	0	0	1	copy fasta	CHST11	chr12	104451948	104767014
CHST11_chr12_104451948_104767014	0/0	t0037	4691	1	1	0	0	0	0	copy fasta	CHST11	chr12	104451948	104767014
CHST11_chr12_104451948_104767014	0/0	t0038	4673	1	1	0	0	0	0	copy fasta	CHST11	chr12	104451948	104767014
CHST11_chr12_104451948_104767014	0/0	t0039	4696	1	1	0	0	0	0	copy fasta	CHST11	chr12	104451948	104767014
CHST11_chr12_104451948_104767014	0/0	t0040	4677	1	0	0	1	0	0	copy fasta	CHST11	chr12	104451948	104767014
CHST11_chr12_104451948_104767014	0/0	t0041	4689	1	1	0	0	0	0	copy fasta	CHST11	chr12	104451948	104767014
CHST11_chr12_104451948_104767014	0/0	t0042	4686	1	1	0	0	0	0	copy fasta	CHST11	chr12	104451948	104767014
CHST11_chr12_104451948_104767014	0/0	t0043	4680	1	1	0	0	0	0	copy fasta	CHST11	chr12	104451948	104767014
CHST11_chr12_104451948_104767014	0/0	t0044	4672	1	0	0	0	1	0	copy fasta	CHST11	chr12	104451948	104767014
CHST11_chr12_104451948_104767014	0/0	t0045	4686	1	1	0	0	0	0	copy fasta	CHST11	chr12	104451948	104767014
CHST11_chr12_104451948_104767014	0/0	t0046	4672	1	0	0	0	1	0	copy fasta	CHST11	chr12	104451948	104767014
CHST11_chr12_104451948_104767014	0/0	t0047	4677	1	0	0	1	0	0	copy fasta	CHST11	chr12	104451948	104767014
CHST11_chr12_104451948_104767014	0/0	t0048	4671	1	0	1	0	0	0	copy fasta	CHST11	chr12	104451948	104767014
CHST11_chr12_104451948_104767014	0/0	t0049	4678	1	0	0	1	0	0	copy fasta	CHST11	chr12	104451948	104767014
CHST11_chr12_104451948_104767014	0/0	t0050	4696	1	1	0	0	0	0	copy fasta	CHST11	chr12	104451948	104767014
CHST11_chr12_104451948_104767014	0/0	t0051	4686	1	0	0	0	0	1	copy fasta	CHST11	chr12	104451948	104767014
CHST11_chr12_104451948_104767014	0/0	t0052	4689	1	1	0	0	0	0	copy fasta	CHST11	chr12	104451948	104767014
CHST11_chr12_104451948_104767014	0/0	t0053	4693	1	1	0	0	0	0	copy fasta	CHST11	chr12	104451948	104767014
CHST11_chr12_104451948_104767014	0/0	t0054	4695	1	0	1	0	0	0	copy fasta	CHST11	chr12	104451948	104767014
CHST11_chr12_104451948_104767014	0/0	t0055	4671	1	1	0	0	0	0	copy fasta	CHST11	chr12	104451948	104767014
CHST11_chr12_104451948_104767014	0/0	t0056	4677	1	1	0	0	0	0	copy fasta	CHST11	chr12	104451948	104767014
CHST11_chr12_104451948_104767014	0/0	t0057	4690	1	1	0	0	0	0	copy fasta	CHST11	chr12	104451948	104767014
CHST11_chr12_104451948_104767014	0/0	t0058	4694	1	0	0	1	0	0	copy fasta	CHST11	chr12	104451948	104767014
CHST11_chr12_104451948_104767014	0/0	t0059	4686	1	1	0	0	0	0	copy fasta	CHST11	chr12	104451948	104767014
CHST11_chr12_104451948_104767014	0/0	t0060	4692	1	1	0	0	0	0	copy fasta	CHST11	chr12	104451948	104767014
CHST11_chr12_104451948_104767014	0/0	t0061	4672	1	0	1	0	0	0	copy fasta	CHST11	chr12	104451948	104767014
CHST11_chr12_104451948_104767014	0/0	t0062	4671	1	0	1	0	0	0	copy fasta	CHST11	chr12	104451948	104767014
CHST11_chr12_104451948_104767014	0/0	t0063	4690	1	1	0	0	0	0	copy fasta	CHST11	chr12	104451948	104767014
CHST11_chr12_104451948_104767014	0/0	t0064	4678	1	1	0	0	0	0	copy fasta	CHST11	chr12	104451948	104767014
CHST11_chr12_104451948_104767014	0/0	t0065	4687	1	1	0	0	0	0	copy fasta	CHST11	chr12	104451948	104767014
CHST11_chr12_104451948_104767014	0/0	t0066	4689	1	1	0	0	0	0	copy fasta	CHST11	chr12	104451948	104767014
CHST11_chr12_104451948_104767014	0/0	t0067	4692	1	1	0	0	0	0	copy fasta	CHST11	chr12	104451948	104767014
CHST11_chr12_104451948_104767014	0/0	t0068	4686	1	1	0	0	0	0	copy fasta	CHST11	chr12	104451948	104767014
CHST11_chr12_104451948_104767014	0/0	t0069	4671	1	0	0	1	0	0	copy fasta	CHST11	chr12	104451948	104767014
CHST11_chr12_104451948_104767014	0/0	t0070	4692	1	0	0	1	0	0	copy fasta	CHST11	chr12	104451948	104767014
CHST11_chr12_104451948_104767014	0/0	t0071	4689	1	0	0	1	0	0	copy fasta	CHST11	chr12	104451948	104767014
CHST12_chr7_2398611_2453484	0/0	t0001	14730	7	0	0	5	0	2	copy fasta	CHST12	chr7	2398611	2453484
CHST12_chr7_2398611_2453484	0/0	t0002	14739	5	5	0	0	0	0	copy fasta	CHST12	chr7	2398611	2453484
CHST12_chr7_2398611_2453484	0/0	t0003	14731	4	0	1	3	0	0	copy fasta	CHST12	chr7	2398611	2453484
CHST12_chr7_2398611_2453484	0/0	t0004	14743	3	0	2	0	1	0	copy fasta	CHST12	chr7	2398611	2453484
CHST12_chr7_2398611_2453484	0/0	t0005	14743	3	0	0	3	0	0	copy fasta	CHST12	chr7	2398611	2453484