Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ADAT2_chr6_143417832_143455695	0/0	t0115	5658	1	0	1	0	0	0	copy fasta	ADAT2	chr6	143417832	143455695
ADAT2_chr6_143417832_143455695	0/0	t0116	5674	1	1	0	0	0	0	copy fasta	ADAT2	chr6	143417832	143455695
ADAT2_chr6_143417832_143455695	0/0	t0117	5656	1	0	1	0	0	0	copy fasta	ADAT2	chr6	143417832	143455695
ADAT2_chr6_143417832_143455695	0/0	t0118	5676	1	1	0	0	0	0	copy fasta	ADAT2	chr6	143417832	143455695
ADAT2_chr6_143417832_143455695	0/0	t0119	5682	1	1	0	0	0	0	copy fasta	ADAT2	chr6	143417832	143455695
ADAT2_chr6_143417832_143455695	0/0	t0120	5655	1	0	1	0	0	0	copy fasta	ADAT2	chr6	143417832	143455695
ADAT2_chr6_143417832_143455695	0/0	t0121	5655	1	0	0	0	1	0	copy fasta	ADAT2	chr6	143417832	143455695
ADAT2_chr6_143417832_143455695	0/0	t0122	5648	1	0	1	0	0	0	copy fasta	ADAT2	chr6	143417832	143455695
ADAT2_chr6_143417832_143455695	0/0	t0123	5672	1	1	0	0	0	0	copy fasta	ADAT2	chr6	143417832	143455695
ADAT2_chr6_143417832_143455695	0/0	t0124	5672	1	1	0	0	0	0	copy fasta	ADAT2	chr6	143417832	143455695
ADAT2_chr6_143417832_143455695	0/0	t0125	5674	1	1	0	0	0	0	copy fasta	ADAT2	chr6	143417832	143455695
ADAT2_chr6_143417832_143455695	0/0	t0126	5677	1	0	0	1	0	0	copy fasta	ADAT2	chr6	143417832	143455695
ADAT2_chr6_143417832_143455695	0/0	t0127	5675	1	0	0	0	0	1	copy fasta	ADAT2	chr6	143417832	143455695
ADAT2_chr6_143417832_143455695	0/0	t0128	5677	1	0	1	0	0	0	copy fasta	ADAT2	chr6	143417832	143455695
ADAT2_chr6_143417832_143455695	0/0	t0129	5674	1	0	1	0	0	0	copy fasta	ADAT2	chr6	143417832	143455695
ADAT2_chr6_143417832_143455695	0/0	t0130	5671	1	0	1	0	0	0	copy fasta	ADAT2	chr6	143417832	143455695
ADAT2_chr6_143417832_143455695	0/0	t0131	5675	1	1	0	0	0	0	copy fasta	ADAT2	chr6	143417832	143455695
ADAT2_chr6_143417832_143455695	0/0	t0132	5679	1	0	1	0	0	0	copy fasta	ADAT2	chr6	143417832	143455695
ADAT2_chr6_143417832_143455695	0/0	t0133	5681	1	1	0	0	0	0	copy fasta	ADAT2	chr6	143417832	143455695
ADAT2_chr6_143417832_143455695	0/0	t0134	5687	1	0	0	1	0	0	copy fasta	ADAT2	chr6	143417832	143455695
ADAT2_chr6_143417832_143455695	0/0	t0135	5671	1	0	0	1	0	0	copy fasta	ADAT2	chr6	143417832	143455695
ADAT2_chr6_143417832_143455695	0/0	t0136	5673	1	0	0	0	0	1	copy fasta	ADAT2	chr6	143417832	143455695
ADAT2_chr6_143417832_143455695	0/0	t0137	5673	1	0	1	0	0	0	copy fasta	ADAT2	chr6	143417832	143455695
ADAT2_chr6_143417832_143455695	0/0	t0138	5674	1	1	0	0	0	0	copy fasta	ADAT2	chr6	143417832	143455695
ADAT2_chr6_143417832_143455695	0/0	t0139	5675	1	0	0	1	0	0	copy fasta	ADAT2	chr6	143417832	143455695
ADAT2_chr6_143417832_143455695	0/0	t0140	5676	1	0	0	1	0	0	copy fasta	ADAT2	chr6	143417832	143455695
ADAT2_chr6_143417832_143455695	0/0	t0141	5678	1	0	0	1	0	0	copy fasta	ADAT2	chr6	143417832	143455695
ADAT2_chr6_143417832_143455695	0/0	t0142	5680	1	0	0	1	0	0	copy fasta	ADAT2	chr6	143417832	143455695
ADAT2_chr6_143417832_143455695	0/0	t0143	5681	1	0	0	1	0	0	copy fasta	ADAT2	chr6	143417832	143455695
ADAT2_chr6_143417832_143455695	0/0	t0144	5684	1	0	0	0	0	1	copy fasta	ADAT2	chr6	143417832	143455695
ADAT2_chr6_143417832_143455695	0/0	t0145	5686	1	0	0	1	0	0	copy fasta	ADAT2	chr6	143417832	143455695
ADAT2_chr6_143417832_143455695	0/0	t0146	5687	1	0	0	1	0	0	copy fasta	ADAT2	chr6	143417832	143455695
ADAT2_chr6_143417832_143455695	0/0	t0147	5686	1	0	1	0	0	0	copy fasta	ADAT2	chr6	143417832	143455695
ADAT2_chr6_143417832_143455695	0/0	t0148	5689	1	0	0	1	0	0	copy fasta	ADAT2	chr6	143417832	143455695
ADAT2_chr6_143417832_143455695	0/0	t0149	5692	1	0	0	1	0	0	copy fasta	ADAT2	chr6	143417832	143455695
ADAT2_chr6_143417832_143455695	0/0	t0150	5685	1	0	0	1	0	0	copy fasta	ADAT2	chr6	143417832	143455695
ADAT2_chr6_143417832_143455695	0/0	t0151	5693	1	0	0	1	0	0	copy fasta	ADAT2	chr6	143417832	143455695
ADAT2_chr6_143417832_143455695	0/0	t0152	5657	1	0	0	0	0	1	copy fasta	ADAT2	chr6	143417832	143455695
ADAT2_chr6_143417832_143455695	0/0	t0153	5669	1	1	0	0	0	0	copy fasta	ADAT2	chr6	143417832	143455695
ADAT2_chr6_143417832_143455695	0/0	t0154	5671	1	0	0	0	0	1	copy fasta	ADAT2	chr6	143417832	143455695
ADAT2_chr6_143417832_143455695	0/0	t0155	5675	1	0	0	1	0	0	copy fasta	ADAT2	chr6	143417832	143455695
ADAT2_chr6_143417832_143455695	0/0	t0156	5675	1	0	0	1	0	0	copy fasta	ADAT2	chr6	143417832	143455695
ADAT2_chr6_143417832_143455695	0/0	t0157	5675	1	0	0	1	0	0	copy fasta	ADAT2	chr6	143417832	143455695
ADAT2_chr6_143417832_143455695	0/0	t0158	5677	1	0	0	1	0	0	copy fasta	ADAT2	chr6	143417832	143455695
ADAT2_chr6_143417832_143455695	0/0	t0159	5675	1	0	0	1	0	0	copy fasta	ADAT2	chr6	143417832	143455695
ADAT2_chr6_143417832_143455695	0/0	t0160	5682	1	0	0	1	0	0	copy fasta	ADAT2	chr6	143417832	143455695
ADAT2_chr6_143417832_143455695	0/0	t0161	5681	1	0	0	1	0	0	copy fasta	ADAT2	chr6	143417832	143455695
ADAT2_chr6_143417832_143455695	0/0	t0162	5667	1	1	0	0	0	0	copy fasta	ADAT2	chr6	143417832	143455695
ADAT2_chr6_143417832_143455695	0/0	t0163	5676	1	1	0	0	0	0	copy fasta	ADAT2	chr6	143417832	143455695
ADAT2_chr6_143417832_143455695	0/0	t0164	5667	1	0	0	1	0	0	copy fasta	ADAT2	chr6	143417832	143455695