JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CHST12_chr7_2398611_2453484	0/0	t0006	14742	3	0	1	2	0	0	copy fasta	CHST12	chr7	2398611	2453484
CHST12_chr7_2398611_2453484	0/0	t0007	14743	3	3	0	0	0	0	copy fasta	CHST12	chr7	2398611	2453484
CHST12_chr7_2398611_2453484	0/0	t0008	14744	2	1	1	0	0	0	copy fasta	CHST12	chr7	2398611	2453484
CHST12_chr7_2398611_2453484	0/0	t0009	14744	2	0	0	1	0	1	copy fasta	CHST12	chr7	2398611	2453484
CHST12_chr7_2398611_2453484	0/0	t0010	14743	2	0	2	0	0	0	copy fasta	CHST12	chr7	2398611	2453484
CHST12_chr7_2398611_2453484	0/0	t0011	14739	2	0	0	0	0	2	copy fasta	CHST12	chr7	2398611	2453484
CHST12_chr7_2398611_2453484	0/0	t0012	14739	2	2	0	0	0	0	copy fasta	CHST12	chr7	2398611	2453484
CHST12_chr7_2398611_2453484	0/0	t0013	14730	2	0	0	2	0	0	copy fasta	CHST12	chr7	2398611	2453484
CHST12_chr7_2398611_2453484	0/0	t0014	14731	2	0	0	2	0	0	copy fasta	CHST12	chr7	2398611	2453484
CHST12_chr7_2398611_2453484	0/0	t0015	14729	2	0	0	1	0	1	copy fasta	CHST12	chr7	2398611	2453484
CHST12_chr7_2398611_2453484	0/0	t0016	14727	2	0	2	0	0	0	copy fasta	CHST12	chr7	2398611	2453484
CHST12_chr7_2398611_2453484	0/0	t0017	14752	2	0	0	2	0	0	copy fasta	CHST12	chr7	2398611	2453484
CHST12_chr7_2398611_2453484	0/0	t0018	14751	2	0	2	0	0	0	copy fasta	CHST12	chr7	2398611	2453484
CHST12_chr7_2398611_2453484	0/0	t0019	14734	2	0	2	0	0	0	copy fasta	CHST12	chr7	2398611	2453484
CHST12_chr7_2398611_2453484	0/0	t0020	14742	2	0	2	0	0	0	copy fasta	CHST12	chr7	2398611	2453484
CHST12_chr7_2398611_2453484	0/0	t0021	14742	2	0	0	0	0	2	copy fasta	CHST12	chr7	2398611	2453484
CHST12_chr7_2398611_2453484	0/0	t0022	14743	2	0	2	0	0	0	copy fasta	CHST12	chr7	2398611	2453484
CHST12_chr7_2398611_2453484	0/0	t0023	14743	2	1	1	0	0	0	copy fasta	CHST12	chr7	2398611	2453484
CHST12_chr7_2398611_2453484	0/0	t0024	14743	2	0	0	2	0	0	copy fasta	CHST12	chr7	2398611	2453484
CHST12_chr7_2398611_2453484	0/0	t0025	14742	2	2	0	0	0	0	copy fasta	CHST12	chr7	2398611	2453484
CHST12_chr7_2398611_2453484	0/0	t0026	14743	2	2	0	0	0	0	copy fasta	CHST12	chr7	2398611	2453484
CHST12_chr7_2398611_2453484	0/0	t0027	14744	2	2	0	0	0	0	copy fasta	CHST12	chr7	2398611	2453484
CHST12_chr7_2398611_2453484	0/0	t0028	14733	1	0	1	0	0	0	copy fasta	CHST12	chr7	2398611	2453484
CHST12_chr7_2398611_2453484	0/0	t0029	14734	1	0	0	0	0	1	copy fasta	CHST12	chr7	2398611	2453484
CHST12_chr7_2398611_2453484	0/0	t0030	14762	1	0	0	1	0	0	copy fasta	CHST12	chr7	2398611	2453484
CHST12_chr7_2398611_2453484	0/0	t0031	14747	1	0	1	0	0	0	copy fasta	CHST12	chr7	2398611	2453484
CHST12_chr7_2398611_2453484	0/0	t0032	14726	1	0	0	0	0	1	copy fasta	CHST12	chr7	2398611	2453484
CHST12_chr7_2398611_2453484	0/0	t0033	14744	1	1	0	0	0	0	copy fasta	CHST12	chr7	2398611	2453484
CHST12_chr7_2398611_2453484	0/0	t0034	14745	1	1	0	0	0	0	copy fasta	CHST12	chr7	2398611	2453484
CHST12_chr7_2398611_2453484	0/0	t0035	14753	1	0	1	0	0	0	copy fasta	CHST12	chr7	2398611	2453484
CHST12_chr7_2398611_2453484	0/0	t0036	14754	1	0	0	1	0	0	copy fasta	CHST12	chr7	2398611	2453484
CHST12_chr7_2398611_2453484	0/0	t0037	14753	1	0	0	0	0	1	copy fasta	CHST12	chr7	2398611	2453484
CHST12_chr7_2398611_2453484	0/0	t0038	14749	1	0	0	0	1	0	copy fasta	CHST12	chr7	2398611	2453484
CHST12_chr7_2398611_2453484	0/0	t0039	14746	1	0	1	0	0	0	copy fasta	CHST12	chr7	2398611	2453484
CHST12_chr7_2398611_2453484	0/0	t0040	14749	1	0	0	0	0	1	copy fasta	CHST12	chr7	2398611	2453484
CHST12_chr7_2398611_2453484	0/0	t0041	14747	1	0	0	1	0	0	copy fasta	CHST12	chr7	2398611	2453484
CHST12_chr7_2398611_2453484	0/0	t0042	14747	1	0	0	1	0	0	copy fasta	CHST12	chr7	2398611	2453484
CHST12_chr7_2398611_2453484	0/0	t0043	14748	1	0	0	1	0	0	copy fasta	CHST12	chr7	2398611	2453484
CHST12_chr7_2398611_2453484	0/0	t0044	14748	1	0	1	0	0	0	copy fasta	CHST12	chr7	2398611	2453484
CHST12_chr7_2398611_2453484	0/0	t0045	14747	1	0	0	0	0	1	copy fasta	CHST12	chr7	2398611	2453484
CHST12_chr7_2398611_2453484	0/0	t0046	14746	1	1	0	0	0	0	copy fasta	CHST12	chr7	2398611	2453484
CHST12_chr7_2398611_2453484	0/0	t0047	14745	1	1	0	0	0	0	copy fasta	CHST12	chr7	2398611	2453484
CHST12_chr7_2398611_2453484	0/0	t0048	14747	1	1	0	0	0	0	copy fasta	CHST12	chr7	2398611	2453484
CHST12_chr7_2398611_2453484	0/0	t0049	14745	1	0	0	1	0	0	copy fasta	CHST12	chr7	2398611	2453484
CHST12_chr7_2398611_2453484	0/0	t0050	14745	1	0	1	0	0	0	copy fasta	CHST12	chr7	2398611	2453484
CHST12_chr7_2398611_2453484	0/0	t0051	14747	1	0	0	1	0	0	copy fasta	CHST12	chr7	2398611	2453484
CHST12_chr7_2398611_2453484	0/0	t0052	14747	1	0	0	1	0	0	copy fasta	CHST12	chr7	2398611	2453484
CHST12_chr7_2398611_2453484	0/0	t0053	14747	1	0	0	1	0	0	copy fasta	CHST12	chr7	2398611	2453484
CHST12_chr7_2398611_2453484	0/0	t0054	14746	1	0	0	1	0	0	copy fasta	CHST12	chr7	2398611	2453484
CHST12_chr7_2398611_2453484	0/0	t0055	14744	1	0	0	1	0	0	copy fasta	CHST12	chr7	2398611	2453484