JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CHST12_chr7_2398611_2453484	0/0	t0106	14740	1	0	0	1	0	0	copy fasta	CHST12	chr7	2398611	2453484
CHST12_chr7_2398611_2453484	0/0	t0107	14739	1	1	0	0	0	0	copy fasta	CHST12	chr7	2398611	2453484
CHST12_chr7_2398611_2453484	0/0	t0108	14740	1	1	0	0	0	0	copy fasta	CHST12	chr7	2398611	2453484
CHST12_chr7_2398611_2453484	0/0	t0109	14740	1	1	0	0	0	0	copy fasta	CHST12	chr7	2398611	2453484
CHST12_chr7_2398611_2453484	0/0	t0110	14738	1	0	1	0	0	0	copy fasta	CHST12	chr7	2398611	2453484
CHST12_chr7_2398611_2453484	0/0	t0111	14740	1	1	0	0	0	0	copy fasta	CHST12	chr7	2398611	2453484
CHST12_chr7_2398611_2453484	0/0	t0112	14735	1	0	0	1	0	0	copy fasta	CHST12	chr7	2398611	2453484
CHST12_chr7_2398611_2453484	0/0	t0113	14730	1	0	1	0	0	0	copy fasta	CHST12	chr7	2398611	2453484
CHST12_chr7_2398611_2453484	0/0	t0114	14731	1	0	0	1	0	0	copy fasta	CHST12	chr7	2398611	2453484
CHST12_chr7_2398611_2453484	0/0	t0115	14732	1	0	0	1	0	0	copy fasta	CHST12	chr7	2398611	2453484
CHST12_chr7_2398611_2453484	0/0	t0116	14730	1	0	0	1	0	0	copy fasta	CHST12	chr7	2398611	2453484
CHST12_chr7_2398611_2453484	0/0	t0117	14729	1	0	1	0	0	0	copy fasta	CHST12	chr7	2398611	2453484
CHST12_chr7_2398611_2453484	0/0	t0118	14732	1	0	0	1	0	0	copy fasta	CHST12	chr7	2398611	2453484
CHST12_chr7_2398611_2453484	0/0	t0119	14731	1	0	0	0	0	1	copy fasta	CHST12	chr7	2398611	2453484
CHST12_chr7_2398611_2453484	0/0	t0120	14730	1	0	0	1	0	0	copy fasta	CHST12	chr7	2398611	2453484
CHST12_chr7_2398611_2453484	0/0	t0121	14731	1	0	1	0	0	0	copy fasta	CHST12	chr7	2398611	2453484
CHST12_chr7_2398611_2453484	0/0	t0122	14731	1	0	0	0	0	1	copy fasta	CHST12	chr7	2398611	2453484
CHST12_chr7_2398611_2453484	0/0	t0123	14732	1	0	0	1	0	0	copy fasta	CHST12	chr7	2398611	2453484
CHST12_chr7_2398611_2453484	0/0	t0124	14729	1	0	0	1	0	0	copy fasta	CHST12	chr7	2398611	2453484
CHST12_chr7_2398611_2453484	0/0	t0125	14729	1	0	0	1	0	0	copy fasta	CHST12	chr7	2398611	2453484
CHST12_chr7_2398611_2453484	0/0	t0126	14731	1	0	0	1	0	0	copy fasta	CHST12	chr7	2398611	2453484
CHST12_chr7_2398611_2453484	0/0	t0127	14731	1	1	0	0	0	0	copy fasta	CHST12	chr7	2398611	2453484
CHST12_chr7_2398611_2453484	0/0	t0128	14730	1	0	0	0	0	1	copy fasta	CHST12	chr7	2398611	2453484
CHST12_chr7_2398611_2453484	0/0	t0129	14730	1	0	0	1	0	0	copy fasta	CHST12	chr7	2398611	2453484
CHST12_chr7_2398611_2453484	0/0	t0130	14714	1	0	0	1	0	0	copy fasta	CHST12	chr7	2398611	2453484
CHST12_chr7_2398611_2453484	0/0	t0131	14730	1	0	1	0	0	0	copy fasta	CHST12	chr7	2398611	2453484
CHST12_chr7_2398611_2453484	0/0	t0132	14726	1	0	0	0	0	1	copy fasta	CHST12	chr7	2398611	2453484
CHST12_chr7_2398611_2453484	0/0	t0133	14729	1	0	0	1	0	0	copy fasta	CHST12	chr7	2398611	2453484
CHST12_chr7_2398611_2453484	0/0	t0134	14732	1	1	0	0	0	0	copy fasta	CHST12	chr7	2398611	2453484
CHST12_chr7_2398611_2453484	0/0	t0135	14731	1	1	0	0	0	0	copy fasta	CHST12	chr7	2398611	2453484
CHST12_chr7_2398611_2453484	0/0	t0136	14729	1	0	0	0	1	0	copy fasta	CHST12	chr7	2398611	2453484
CHST12_chr7_2398611_2453484	0/0	t0137	14725	1	0	0	1	0	0	copy fasta	CHST12	chr7	2398611	2453484
CHST12_chr7_2398611_2453484	0/0	t0138	14725	1	0	0	1	0	0	copy fasta	CHST12	chr7	2398611	2453484
CHST12_chr7_2398611_2453484	0/0	t0139	14728	1	0	0	1	0	0	copy fasta	CHST12	chr7	2398611	2453484
CHST12_chr7_2398611_2453484	0/0	t0140	14726	1	1	0	0	0	0	copy fasta	CHST12	chr7	2398611	2453484
CHST12_chr7_2398611_2453484	0/0	t0141	14728	1	0	1	0	0	0	copy fasta	CHST12	chr7	2398611	2453484
CHST12_chr7_2398611_2453484	0/0	t0142	14726	1	1	0	0	0	0	copy fasta	CHST12	chr7	2398611	2453484
CHST12_chr7_2398611_2453484	0/0	t0143	14725	1	1	0	0	0	0	copy fasta	CHST12	chr7	2398611	2453484
CHST12_chr7_2398611_2453484	0/0	t0144	14720	1	0	0	1	0	0	copy fasta	CHST12	chr7	2398611	2453484
CHST12_chr7_2398611_2453484	0/0	t0145	14724	1	0	0	1	0	0	copy fasta	CHST12	chr7	2398611	2453484
CHST12_chr7_2398611_2453484	0/0	t0146	14758	1	0	0	1	0	0	copy fasta	CHST12	chr7	2398611	2453484
CHST12_chr7_2398611_2453484	0/0	t0147	14755	1	0	0	1	0	0	copy fasta	CHST12	chr7	2398611	2453484
CHST12_chr7_2398611_2453484	0/0	t0148	14756	1	0	0	1	0	0	copy fasta	CHST12	chr7	2398611	2453484
CHST12_chr7_2398611_2453484	0/0	t0149	14755	1	0	0	1	0	0	copy fasta	CHST12	chr7	2398611	2453484
CHST12_chr7_2398611_2453484	0/0	t0150	14755	1	0	0	1	0	0	copy fasta	CHST12	chr7	2398611	2453484
CHST12_chr7_2398611_2453484	0/0	t0151	14754	1	0	0	1	0	0	copy fasta	CHST12	chr7	2398611	2453484
CHST12_chr7_2398611_2453484	0/0	t0152	14756	1	0	0	1	0	0	copy fasta	CHST12	chr7	2398611	2453484
CHST12_chr7_2398611_2453484	0/0	t0153	14754	1	0	0	1	0	0	copy fasta	CHST12	chr7	2398611	2453484
CHST12_chr7_2398611_2453484	0/0	t0154	14754	1	0	0	1	0	0	copy fasta	CHST12	chr7	2398611	2453484
CHST12_chr7_2398611_2453484	0/0	t0155	14752	1	1	0	0	0	0	copy fasta	CHST12	chr7	2398611	2453484