JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	SAS	tseq	genename	chr	start	end
CHST12_chr7_2398611_2453484	0/0	t0156	14752	1	0	1	0	0	copy fasta	CHST12	chr7	2398611	2453484
CHST12_chr7_2398611_2453484	0/0	t0157	14751	1	0	1	0	0	copy fasta	CHST12	chr7	2398611	2453484
CHST12_chr7_2398611_2453484	0/0	t0158	14751	1	0	0	1	0	copy fasta	CHST12	chr7	2398611	2453484
CHST12_chr7_2398611_2453484	0/0	t0159	14753	1	0	0	1	0	copy fasta	CHST12	chr7	2398611	2453484
CHST12_chr7_2398611_2453484	0/0	t0160	14751	1	0	0	1	0	copy fasta	CHST12	chr7	2398611	2453484
CHST12_chr7_2398611_2453484	0/0	t0161	14750	1	0	0	1	0	copy fasta	CHST12	chr7	2398611	2453484
CHST12_chr7_2398611_2453484	0/0	t0162	14751	1	0	1	0	0	copy fasta	CHST12	chr7	2398611	2453484
CHST12_chr7_2398611_2453484	0/0	t0163	14751	1	0	0	1	0	copy fasta	CHST12	chr7	2398611	2453484
CHST12_chr7_2398611_2453484	0/0	t0164	14752	1	1	0	0	0	copy fasta	CHST12	chr7	2398611	2453484
CHST12_chr7_2398611_2453484	0/0	t0165	14747	1	0	0	1	0	copy fasta	CHST12	chr7	2398611	2453484
CHST12_chr7_2398611_2453484	0/0	t0166	14747	1	1	0	0	0	copy fasta	CHST12	chr7	2398611	2453484
CHST12_chr7_2398611_2453484	0/0	t0167	14750	1	0	0	1	0	copy fasta	CHST12	chr7	2398611	2453484
CHST12_chr7_2398611_2453484	0/0	t0168	14746	1	1	0	0	0	copy fasta	CHST12	chr7	2398611	2453484
CHST12_chr7_2398611_2453484	0/0	t0169	14754	1	0	0	1	0	copy fasta	CHST12	chr7	2398611	2453484
CHST12_chr7_2398611_2453484	0/0	t0170	14714	1	1	0	0	0	copy fasta	CHST12	chr7	2398611	2453484
CHST12_chr7_2398611_2453484	0/0	t0171	14753	1	1	0	0	0	copy fasta	CHST12	chr7	2398611	2453484
CHST12_chr7_2398611_2453484	0/0	t0172	14744	1	1	0	0	0	copy fasta	CHST12	chr7	2398611	2453484
CHST12_chr7_2398611_2453484	0/0	t0173	14742	1	1	0	0	0	copy fasta	CHST12	chr7	2398611	2453484
CHST12_chr7_2398611_2453484	0/0	t0174	14739	1	0	0	0	1	copy fasta	CHST12	chr7	2398611	2453484
CHST12_chr7_2398611_2453484	0/0	t0175	14755	1	0	0	1	0	copy fasta	CHST12	chr7	2398611	2453484
CHST12_chr7_2398611_2453484	0/0	t0176	14748	1	0	0	1	0	copy fasta	CHST12	chr7	2398611	2453484
CHST12_chr7_2398611_2453484	0/0	t0177	14745	1	0	0	1	0	copy fasta	CHST12	chr7	2398611	2453484
CHST12_chr7_2398611_2453484	0/0	t0178	14727	1	0	0	1	0	copy fasta	CHST12	chr7	2398611	2453484
CHST12_chr7_2398611_2453484	0/0	t0179	14732	1	1	0	0	0	copy fasta	CHST12	chr7	2398611	2453484
CHST12_chr7_2398611_2453484	0/0	t0180	14745	1	0	0	1	0	copy fasta	CHST12	chr7	2398611	2453484
CHST12_chr7_2398611_2453484	0/0	t0181	14735	1	1	0	0	0	copy fasta	CHST12	chr7	2398611	2453484
CHST12_chr7_2398611_2453484	0/0	t0182	14735	1	1	0	0	0	copy fasta	CHST12	chr7	2398611	2453484
CHST12_chr7_2398611_2453484	0/0	t0183	14729	1	1	0	0	0	copy fasta	CHST12	chr7	2398611	2453484
CHST12_chr7_2398611_2453484	0/0	t0184	14732	1	1	0	0	0	copy fasta	CHST12	chr7	2398611	2453484
CHST12_chr7_2398611_2453484	0/0	t0185	14729	1	1	0	0	0	copy fasta	CHST12	chr7	2398611	2453484
CHST12_chr7_2398611_2453484	0/0	t0186	14752	1	0	0	1	0	copy fasta	CHST12	chr7	2398611	2453484
CHST12_chr7_2398611_2453484	0/0	t0187	14741	1	1	0	0	0	copy fasta	CHST12	chr7	2398611	2453484
CHST12_chr7_2398611_2453484	0/0	t0188	14744	1	0	0	1	0	copy fasta	CHST12	chr7	2398611	2453484
CHST12_chr7_2398611_2453484	0/0	t0189	14741	1	0	1	0	0	copy fasta	CHST12	chr7	2398611	2453484
CHST12_chr7_2398611_2453484	0/0	t0190	14751	1	0	1	0	0	copy fasta	CHST12	chr7	2398611	2453484
CHST12_chr7_2398611_2453484	0/0	t0191	14751	1	1	0	0	0	copy fasta	CHST12	chr7	2398611	2453484
CHST12_chr7_2398611_2453484	0/0	t0192	14750	1	1	0	0	0	copy fasta	CHST12	chr7	2398611	2453484
CHST12_chr7_2398611_2453484	0/0	t0193	14743	1	0	1	0	0	copy fasta	CHST12	chr7	2398611	2453484
CHST12_chr7_2398611_2453484	0/0	t0194	14738	1	0	1	0	0	copy fasta	CHST12	chr7	2398611	2453484
CHST12_chr7_2398611_2453484	0/0	t0195	14737	1	0	0	1	0	copy fasta	CHST12	chr7	2398611	2453484
CHST12_chr7_2398611_2453484	1/0	t0196	14741	1	0	0	0	0	copy fasta	CHST12	chr7	2398611	2453484
CHST12_chr7_2398611_2453484	0/0	t0197	14740	1	0	1	0	0	copy fasta	CHST12	chr7	2398611	2453484
CHST12_chr7_2398611_2453484	0/0	t0198	14736	1	0	0	1	0	copy fasta	CHST12	chr7	2398611	2453484
CHST12_chr7_2398611_2453484	0/0	t0199	14735	1	0	0	1	0	copy fasta	CHST12	chr7	2398611	2453484
CHST12_chr7_2398611_2453484	0/0	t0200	14742	1	0	0	0	1	copy fasta	CHST12	chr7	2398611	2453484
CHST12_chr7_2398611_2453484	0/0	t0201	14741	1	0	1	0	0	copy fasta	CHST12	chr7	2398611	2453484
CHST12_chr7_2398611_2453484	0/0	t0202	14732	1	0	0	0	1	copy fasta	CHST12	chr7	2398611	2453484
CHST12_chr7_2398611_2453484	0/0	t0203	14737	1	1	0	0	0	copy fasta	CHST12	chr7	2398611	2453484
CHST12_chr7_2398611_2453484	0/0	t0204	14740	1	0	0	0	1	copy fasta	CHST12	chr7	2398611	2453484
CHST12_chr7_2398611_2453484	0/0	t0205	14738	1	0	1	0	0	copy fasta	CHST12	chr7	2398611	2453484