JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CHST12_chr7_2398611_2453484	0/0	t0256	14744	1	1	0	0	0	0	copy fasta	CHST12	chr7	2398611	2453484
CHST12_chr7_2398611_2453484	0/0	t0257	14746	1	0	0	1	0	0	copy fasta	CHST12	chr7	2398611	2453484
CHST12_chr7_2398611_2453484	0/0	t0258	14743	1	0	0	1	0	0	copy fasta	CHST12	chr7	2398611	2453484
CHST12_chr7_2398611_2453484	0/0	t0259	14745	1	0	0	1	0	0	copy fasta	CHST12	chr7	2398611	2453484
CHST12_chr7_2398611_2453484	0/0	t0260	14744	1	0	0	1	0	0	copy fasta	CHST12	chr7	2398611	2453484
CHST12_chr7_2398611_2453484	0/0	t0261	14743	1	0	0	1	0	0	copy fasta	CHST12	chr7	2398611	2453484
CHST12_chr7_2398611_2453484	0/0	t0262	14743	1	0	0	1	0	0	copy fasta	CHST12	chr7	2398611	2453484
CHST12_chr7_2398611_2453484	0/0	t0263	14744	1	0	0	1	0	0	copy fasta	CHST12	chr7	2398611	2453484
CHST12_chr7_2398611_2453484	0/0	t0264	14743	1	0	0	1	0	0	copy fasta	CHST12	chr7	2398611	2453484
CHST12_chr7_2398611_2453484	0/0	t0265	14745	1	0	1	0	0	0	copy fasta	CHST12	chr7	2398611	2453484
CHST12_chr7_2398611_2453484	0/0	t0266	14743	1	0	1	0	0	0	copy fasta	CHST12	chr7	2398611	2453484
CHST12_chr7_2398611_2453484	0/0	t0267	14744	1	1	0	0	0	0	copy fasta	CHST12	chr7	2398611	2453484
CHST12_chr7_2398611_2453484	0/0	t0268	14739	1	0	0	1	0	0	copy fasta	CHST12	chr7	2398611	2453484
CHST12_chr7_2398611_2453484	0/0	t0269	14742	1	0	0	1	0	0	copy fasta	CHST12	chr7	2398611	2453484
CHST12_chr7_2398611_2453484	0/0	t0270	14743	1	1	0	0	0	0	copy fasta	CHST12	chr7	2398611	2453484
CHST12_chr7_2398611_2453484	0/0	t0271	14738	1	0	1	0	0	0	copy fasta	CHST12	chr7	2398611	2453484
CHST12_chr7_2398611_2453484	0/0	t0272	14744	1	1	0	0	0	0	copy fasta	CHST12	chr7	2398611	2453484
CHST12_chr7_2398611_2453484	0/0	t0273	14744	1	1	0	0	0	0	copy fasta	CHST12	chr7	2398611	2453484
CHST12_chr7_2398611_2453484	0/0	t0274	14744	1	0	1	0	0	0	copy fasta	CHST12	chr7	2398611	2453484
CHST12_chr7_2398611_2453484	0/0	t0275	14740	1	0	1	0	0	0	copy fasta	CHST12	chr7	2398611	2453484
CHST12_chr7_2398611_2453484	0/0	t0276	14745	1	0	0	1	0	0	copy fasta	CHST12	chr7	2398611	2453484
CHST12_chr7_2398611_2453484	0/0	t0277	14744	1	1	0	0	0	0	copy fasta	CHST12	chr7	2398611	2453484
CHST12_chr7_2398611_2453484	0/0	t0278	14742	1	0	0	0	0	1	copy fasta	CHST12	chr7	2398611	2453484
CHST12_chr7_2398611_2453484	0/0	t0279	14742	1	0	0	1	0	0	copy fasta	CHST12	chr7	2398611	2453484
CHST12_chr7_2398611_2453484	0/0	t0280	14742	1	0	1	0	0	0	copy fasta	CHST12	chr7	2398611	2453484
CHST12_chr7_2398611_2453484	0/0	t0281	14743	1	1	0	0	0	0	copy fasta	CHST12	chr7	2398611	2453484
CHST12_chr7_2398611_2453484	0/0	t0282	14734	1	1	0	0	0	0	copy fasta	CHST12	chr7	2398611	2453484
CHST12_chr7_2398611_2453484	0/0	t0283	14735	1	0	0	0	0	1	copy fasta	CHST12	chr7	2398611	2453484
CHST12_chr7_2398611_2453484	0/0	t0284	14735	1	0	0	1	0	0	copy fasta	CHST12	chr7	2398611	2453484
CHST12_chr7_2398611_2453484	0/0	t0285	14735	1	1	0	0	0	0	copy fasta	CHST12	chr7	2398611	2453484
CHST12_chr7_2398611_2453484	0/0	t0286	14725	1	0	0	0	0	1	copy fasta	CHST12	chr7	2398611	2453484
CHST12_chr7_2398611_2453484	0/0	t0287	14717	1	1	0	0	0	0	copy fasta	CHST12	chr7	2398611	2453484
CHST12_chr7_2398611_2453484	0/0	t0288	14725	1	0	0	1	0	0	copy fasta	CHST12	chr7	2398611	2453484
CHST12_chr7_2398611_2453484	0/0	t0289	14715	1	1	0	0	0	0	copy fasta	CHST12	chr7	2398611	2453484
CHST12_chr7_2398611_2453484	0/0	t0290	14737	1	1	0	0	0	0	copy fasta	CHST12	chr7	2398611	2453484
CHST12_chr7_2398611_2453484	0/0	t0291	14731	1	0	0	0	0	1	copy fasta	CHST12	chr7	2398611	2453484
CHST12_chr7_2398611_2453484	0/0	t0292	14731	1	0	0	0	0	1	copy fasta	CHST12	chr7	2398611	2453484
CHST12_chr7_2398611_2453484	0/0	t0293	14731	1	1	0	0	0	0	copy fasta	CHST12	chr7	2398611	2453484
CHST12_chr7_2398611_2453484	0/0	t0294	14729	1	0	0	0	0	1	copy fasta	CHST12	chr7	2398611	2453484
CHST12_chr7_2398611_2453484	0/0	t0295	14727	1	0	1	0	0	0	copy fasta	CHST12	chr7	2398611	2453484
CHST12_chr7_2398611_2453484	0/0	t0296	14725	1	0	0	1	0	0	copy fasta	CHST12	chr7	2398611	2453484
CHST12_chr7_2398611_2453484	0/0	t0297	14728	1	0	0	0	0	1	copy fasta	CHST12	chr7	2398611	2453484
CHST12_chr7_2398611_2453484	0/0	t0298	14710	1	1	0	0	0	0	copy fasta	CHST12	chr7	2398611	2453484
CHST12_chr7_2398611_2453484	0/0	t0299	14709	1	1	0	0	0	0	copy fasta	CHST12	chr7	2398611	2453484
CHST12_chr7_2398611_2453484	0/0	t0300	14711	1	1	0	0	0	0	copy fasta	CHST12	chr7	2398611	2453484
CHST12_chr7_2398611_2453484	0/0	t0301	14708	1	1	0	0	0	0	copy fasta	CHST12	chr7	2398611	2453484
CHST12_chr7_2398611_2453484	0/0	t0302	14707	1	1	0	0	0	0	copy fasta	CHST12	chr7	2398611	2453484
CHST12_chr7_2398611_2453484	0/0	t0303	14743	1	0	0	0	1	0	copy fasta	CHST12	chr7	2398611	2453484
CHST13_chr3_126519155_126548291	1/1	t0001	892	326	90	70	120	14	30	copy fasta	CHST13	chr3	126519155	126548291
CHST13_chr3_126519155_126548291	0/0	t0002	892	34	5	6	17	2	4	copy fasta	CHST13	chr3	126519155	126548291