JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CHST13_chr3_126519155_126548291	0/0	t0003	892	1	0	1	0	0	0	copy fasta	CHST13	chr3	126519155	126548291
CHST13_chr3_126519155_126548291	0/0	t0004	892	1	1	0	0	0	0	copy fasta	CHST13	chr3	126519155	126548291
CHST13_chr3_126519155_126548291	0/0	t0005	892	1	0	0	1	0	0	copy fasta	CHST13	chr3	126519155	126548291
CHST13_chr3_126519155_126548291	0/0	t0006	892	1	0	1	0	0	0	copy fasta	CHST13	chr3	126519155	126548291
CHST14_chr15_40465984_40478158	1/0	t0001	1045	320	64	67	131	18	39	copy fasta	CHST14	chr15	40465984	40478158
CHST14_chr15_40465984_40478158	0/1	t0002	1045	63	29	3	24	0	6	copy fasta	CHST14	chr15	40465984	40478158
CHST14_chr15_40465984_40478158	0/0	t0003	1045	19	0	0	19	0	0	copy fasta	CHST14	chr15	40465984	40478158
CHST14_chr15_40465984_40478158	0/0	t0004	1045	3	0	0	3	0	0	copy fasta	CHST14	chr15	40465984	40478158
CHST14_chr15_40465984_40478158	0/0	t0005	1045	3	0	0	3	0	0	copy fasta	CHST14	chr15	40465984	40478158
CHST14_chr15_40465984_40478158	0/0	t0006	1045	1	1	0	0	0	0	copy fasta	CHST14	chr15	40465984	40478158
CHST14_chr15_40465984_40478158	0/0	t0007	1045	1	0	0	0	0	1	copy fasta	CHST14	chr15	40465984	40478158
CHST14_chr15_40465984_40478158	0/0	t0008	1045	1	1	0	0	0	0	copy fasta	CHST14	chr15	40465984	40478158
CHST14_chr15_40465984_40478158	0/0	t0009	1045	1	1	0	0	0	0	copy fasta	CHST14	chr15	40465984	40478158
CHST15_chr10_124002668_124098598	0/0	t0001	3122	137	23	34	61	6	13	copy fasta	CHST15	chr10	124002668	124098598
CHST15_chr10_124002668_124098598	0/0	t0002	3122	68	13	7	41	3	4	copy fasta	CHST15	chr10	124002668	124098598
CHST15_chr10_124002668_124098598	1/1	t0003	3124	61	10	19	14	5	11	copy fasta	CHST15	chr10	124002668	124098598
CHST15_chr10_124002668_124098598	0/0	t0004	3122	43	9	13	13	0	8	copy fasta	CHST15	chr10	124002668	124098598
CHST15_chr10_124002668_124098598	0/0	t0005	3122	9	0	0	8	0	1	copy fasta	CHST15	chr10	124002668	124098598
CHST15_chr10_124002668_124098598	0/0	t0006	3122	8	1	2	0	0	5	copy fasta	CHST15	chr10	124002668	124098598
CHST15_chr10_124002668_124098598	0/0	t0007	3129	8	0	2	6	0	0	copy fasta	CHST15	chr10	124002668	124098598
CHST15_chr10_124002668_124098598	0/0	t0008	3124	7	7	0	0	0	0	copy fasta	CHST15	chr10	124002668	124098598
CHST15_chr10_124002668_124098598	0/0	t0009	3122	4	4	0	0	0	0	copy fasta	CHST15	chr10	124002668	124098598
CHST15_chr10_124002668_124098598	0/0	t0010	3121	4	4	0	0	0	0	copy fasta	CHST15	chr10	124002668	124098598
CHST15_chr10_124002668_124098598	0/0	t0011	3122	4	0	0	4	0	0	copy fasta	CHST15	chr10	124002668	124098598
CHST15_chr10_124002668_124098598	0/0	t0012	3126	4	3	0	0	0	1	copy fasta	CHST15	chr10	124002668	124098598
CHST15_chr10_124002668_124098598	0/0	t0013	3122	3	3	0	0	0	0	copy fasta	CHST15	chr10	124002668	124098598
CHST15_chr10_124002668_124098598	0/0	t0014	3127	3	2	1	0	0	0	copy fasta	CHST15	chr10	124002668	124098598
CHST15_chr10_124002668_124098598	0/0	t0015	3129	3	3	0	0	0	0	copy fasta	CHST15	chr10	124002668	124098598
CHST15_chr10_124002668_124098598	0/0	t0016	3122	2	0	0	0	0	2	copy fasta	CHST15	chr10	124002668	124098598
CHST15_chr10_124002668_124098598	0/0	t0017	3122	2	1	0	0	1	0	copy fasta	CHST15	chr10	124002668	124098598
CHST15_chr10_124002668_124098598	0/0	t0018	3122	1	1	0	0	0	0	copy fasta	CHST15	chr10	124002668	124098598
CHST15_chr10_124002668_124098598	0/0	t0019	3122	1	1	0	0	0	0	copy fasta	CHST15	chr10	124002668	124098598
CHST15_chr10_124002668_124098598	0/0	t0020	3107	1	0	0	1	0	0	copy fasta	CHST15	chr10	124002668	124098598
CHST15_chr10_124002668_124098598	0/0	t0021	3122	1	0	0	1	0	0	copy fasta	CHST15	chr10	124002668	124098598
CHST15_chr10_124002668_124098598	0/0	t0022	3122	1	1	0	0	0	0	copy fasta	CHST15	chr10	124002668	124098598
CHST15_chr10_124002668_124098598	0/0	t0023	3124	1	0	0	0	1	0	copy fasta	CHST15	chr10	124002668	124098598
CHST15_chr10_124002668_124098598	0/0	t0024	3122	1	1	0	0	0	0	copy fasta	CHST15	chr10	124002668	124098598
CHST15_chr10_124002668_124098598	0/0	t0025	3122	1	1	0	0	0	0	copy fasta	CHST15	chr10	124002668	124098598
CHST15_chr10_124002668_124098598	0/0	t0026	3122	1	0	1	0	0	0	copy fasta	CHST15	chr10	124002668	124098598
CHST15_chr10_124002668_124098598	0/0	t0027	3124	1	0	0	1	0	0	copy fasta	CHST15	chr10	124002668	124098598
CHST15_chr10_124002668_124098598	0/0	t0028	3122	1	1	0	0	0	0	copy fasta	CHST15	chr10	124002668	124098598
CHST15_chr10_124002668_124098598	0/0	t0029	3122	1	0	0	0	0	1	copy fasta	CHST15	chr10	124002668	124098598
CHST15_chr10_124002668_124098598	0/0	t0030	3122	1	1	0	0	0	0	copy fasta	CHST15	chr10	124002668	124098598
CHST15_chr10_124002668_124098598	0/0	t0031	3129	1	1	0	0	0	0	copy fasta	CHST15	chr10	124002668	124098598
CHST15_chr10_124002668_124098598	0/0	t0032	3122	1	1	0	0	0	0	copy fasta	CHST15	chr10	124002668	124098598
CHST15_chr10_124002668_124098598	0/0	t0033	3124	1	1	0	0	0	0	copy fasta	CHST15	chr10	124002668	124098598
CHST15_chr10_124002668_124098598	0/0	t0034	3121	1	1	0	0	0	0	copy fasta	CHST15	chr10	124002668	124098598
CHST15_chr10_124002668_124098598	0/0	t0035	3122	1	1	0	0	0	0	copy fasta	CHST15	chr10	124002668	124098598
CHST15_chr10_124002668_124098598	0/0	t0036	3122	1	1	0	0	0	0	copy fasta	CHST15	chr10	124002668	124098598
CHST15_chr10_124002668_124098598	0/0	t0037	3122	1	0	1	0	0	0	copy fasta	CHST15	chr10	124002668	124098598