JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CHST15_chr10_124002668_124098598	0/0	t0038	3124	1	1	0	0	0	0	copy fasta	CHST15	chr10	124002668	124098598
CHST15_chr10_124002668_124098598	0/0	t0039	3124	1	1	0	0	0	0	copy fasta	CHST15	chr10	124002668	124098598
CHST1_chr11_45642689_45670622	0/0	t0001	2670	133	20	26	67	8	12	copy fasta	CHST1	chr11	45642689	45670622
CHST1_chr11_45642689_45670622	0/1	t0002	2670	76	16	12	29	5	13	copy fasta	CHST1	chr11	45642689	45670622
CHST1_chr11_45642689_45670622	0/0	t0003	2670	75	0	12	58	0	5	copy fasta	CHST1	chr11	45642689	45670622
CHST1_chr11_45642689_45670622	0/0	t0004	2670	13	13	0	0	0	0	copy fasta	CHST1	chr11	45642689	45670622
CHST1_chr11_45642689_45670622	0/0	t0005	2671	13	12	1	0	0	0	copy fasta	CHST1	chr11	45642689	45670622
CHST1_chr11_45642689_45670622	0/0	t0006	2672	10	9	1	0	0	0	copy fasta	CHST1	chr11	45642689	45670622
CHST1_chr11_45642689_45670622	0/0	t0007	2670	6	0	1	3	0	2	copy fasta	CHST1	chr11	45642689	45670622
CHST1_chr11_45642689_45670622	0/0	t0008	2671	5	0	2	0	2	1	copy fasta	CHST1	chr11	45642689	45670622
CHST1_chr11_45642689_45670622	0/0	t0009	2670	4	0	2	1	0	1	copy fasta	CHST1	chr11	45642689	45670622
CHST1_chr11_45642689_45670622	0/0	t0010	2671	4	3	0	0	0	1	copy fasta	CHST1	chr11	45642689	45670622
CHST1_chr11_45642689_45670622	0/0	t0011	2670	3	3	0	0	0	0	copy fasta	CHST1	chr11	45642689	45670622
CHST1_chr11_45642689_45670622	0/0	t0012	2670	3	3	0	0	0	0	copy fasta	CHST1	chr11	45642689	45670622
CHST1_chr11_45642689_45670622	0/0	t0013	2670	3	0	0	3	0	0	copy fasta	CHST1	chr11	45642689	45670622
CHST1_chr11_45642689_45670622	0/0	t0014	2670	3	0	0	3	0	0	copy fasta	CHST1	chr11	45642689	45670622
CHST1_chr11_45642689_45670622	0/0	t0015	2671	2	2	0	0	0	0	copy fasta	CHST1	chr11	45642689	45670622
CHST1_chr11_45642689_45670622	0/0	t0016	2671	2	1	1	0	0	0	copy fasta	CHST1	chr11	45642689	45670622
CHST1_chr11_45642689_45670622	0/0	t0017	2670	2	0	2	0	0	0	copy fasta	CHST1	chr11	45642689	45670622
CHST1_chr11_45642689_45670622	0/0	t0018	2670	2	2	0	0	0	0	copy fasta	CHST1	chr11	45642689	45670622
CHST1_chr11_45642689_45670622	0/0	t0019	2670	2	0	1	0	1	0	copy fasta	CHST1	chr11	45642689	45670622
CHST1_chr11_45642689_45670622	0/0	t0020	2670	2	0	0	2	0	0	copy fasta	CHST1	chr11	45642689	45670622
CHST1_chr11_45642689_45670622	0/0	t0021	2671	1	0	1	0	0	0	copy fasta	CHST1	chr11	45642689	45670622
CHST1_chr11_45642689_45670622	0/0	t0022	2672	1	0	0	1	0	0	copy fasta	CHST1	chr11	45642689	45670622
CHST1_chr11_45642689_45670622	1/0	t0023	2671	1	0	0	0	0	0	copy fasta	CHST1	chr11	45642689	45670622
CHST1_chr11_45642689_45670622	0/0	t0024	2671	1	1	0	0	0	0	copy fasta	CHST1	chr11	45642689	45670622
CHST1_chr11_45642689_45670622	0/0	t0025	2670	1	1	0	0	0	0	copy fasta	CHST1	chr11	45642689	45670622
CHST1_chr11_45642689_45670622	0/0	t0026	2670	1	1	0	0	0	0	copy fasta	CHST1	chr11	45642689	45670622
CHST1_chr11_45642689_45670622	0/0	t0027	2670	1	1	0	0	0	0	copy fasta	CHST1	chr11	45642689	45670622
CHST1_chr11_45642689_45670622	0/0	t0028	2670	1	0	0	0	0	1	copy fasta	CHST1	chr11	45642689	45670622
CHST1_chr11_45642689_45670622	0/0	t0029	2671	1	0	1	0	0	0	copy fasta	CHST1	chr11	45642689	45670622
CHST1_chr11_45642689_45670622	0/0	t0030	2672	1	1	0	0	0	0	copy fasta	CHST1	chr11	45642689	45670622
CHST1_chr11_45642689_45670622	0/0	t0031	2671	1	1	0	0	0	0	copy fasta	CHST1	chr11	45642689	45670622
CHST1_chr11_45642689_45670622	0/0	t0032	2672	1	0	1	0	0	0	copy fasta	CHST1	chr11	45642689	45670622
CHST1_chr11_45642689_45670622	0/0	t0033	2670	1	1	0	0	0	0	copy fasta	CHST1	chr11	45642689	45670622
CHST1_chr11_45642689_45670622	0/0	t0034	2670	1	1	0	0	0	0	copy fasta	CHST1	chr11	45642689	45670622
CHST1_chr11_45642689_45670622	0/0	t0035	2671	1	1	0	0	0	0	copy fasta	CHST1	chr11	45642689	45670622
CHST1_chr11_45642689_45670622	0/0	t0036	2670	1	1	0	0	0	0	copy fasta	CHST1	chr11	45642689	45670622
CHST1_chr11_45642689_45670622	0/0	t0037	2670	1	0	0	1	0	0	copy fasta	CHST1	chr11	45642689	45670622
CHST1_chr11_45642689_45670622	0/0	t0038	2670	1	0	0	1	0	0	copy fasta	CHST1	chr11	45642689	45670622
CHST1_chr11_45642689_45670622	0/0	t0039	2671	1	0	0	0	0	1	copy fasta	CHST1	chr11	45642689	45670622
CHST1_chr11_45642689_45670622	0/0	t0040	2670	1	0	0	0	0	1	copy fasta	CHST1	chr11	45642689	45670622
CHST1_chr11_45642689_45670622	0/0	t0041	2671	1	0	0	1	0	0	copy fasta	CHST1	chr11	45642689	45670622
CHST1_chr11_45642689_45670622	0/0	t0042	2670	1	0	0	1	0	0	copy fasta	CHST1	chr11	45642689	45670622
CHST1_chr11_45642689_45670622	0/0	t0043	2670	1	0	0	1	0	0	copy fasta	CHST1	chr11	45642689	45670622
CHST2_chr3_143114771_143129014	0/0	t0001	2550	106	13	20	63	5	5	copy fasta	CHST2	chr3	143114771	143129014
CHST2_chr3_143114771_143129014	1/1	t0002	2550	100	4	15	66	7	6	copy fasta	CHST2	chr3	143114771	143129014
CHST2_chr3_143114771_143129014	0/0	t0003	2550	74	4	16	40	3	11	copy fasta	CHST2	chr3	143114771	143129014
CHST2_chr3_143114771_143129014	0/0	t0004	2550	19	1	1	17	0	0	copy fasta	CHST2	chr3	143114771	143129014
CHST2_chr3_143114771_143129014	0/0	t0005	2550	18	4	7	0	1	6	copy fasta	CHST2	chr3	143114771	143129014