JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CHST2_chr3_143114771_143129014	0/0	t0006	2550	18	12	1	5	0	0	copy fasta	CHST2	chr3	143114771	143129014
CHST2_chr3_143114771_143129014	0/0	t0007	2550	15	15	0	0	0	0	copy fasta	CHST2	chr3	143114771	143129014
CHST2_chr3_143114771_143129014	0/0	t0008	2550	10	4	1	1	0	4	copy fasta	CHST2	chr3	143114771	143129014
CHST2_chr3_143114771_143129014	0/0	t0009	2550	9	0	0	4	1	4	copy fasta	CHST2	chr3	143114771	143129014
CHST2_chr3_143114771_143129014	0/0	t0010	2550	7	6	1	0	0	0	copy fasta	CHST2	chr3	143114771	143129014
CHST2_chr3_143114771_143129014	0/0	t0011	2550	7	1	5	0	0	1	copy fasta	CHST2	chr3	143114771	143129014
CHST2_chr3_143114771_143129014	0/0	t0012	2550	7	7	0	0	0	0	copy fasta	CHST2	chr3	143114771	143129014
CHST2_chr3_143114771_143129014	0/0	t0013	2549	5	0	2	3	0	0	copy fasta	CHST2	chr3	143114771	143129014
CHST2_chr3_143114771_143129014	0/0	t0014	2550	5	1	0	4	0	0	copy fasta	CHST2	chr3	143114771	143129014
CHST2_chr3_143114771_143129014	0/0	t0015	2550	4	0	1	1	0	2	copy fasta	CHST2	chr3	143114771	143129014
CHST2_chr3_143114771_143129014	0/0	t0016	2550	4	4	0	0	0	0	copy fasta	CHST2	chr3	143114771	143129014
CHST2_chr3_143114771_143129014	0/0	t0017	2550	4	0	0	2	1	1	copy fasta	CHST2	chr3	143114771	143129014
CHST2_chr3_143114771_143129014	0/0	t0018	2550	3	3	0	0	0	0	copy fasta	CHST2	chr3	143114771	143129014
CHST2_chr3_143114771_143129014	0/0	t0019	2550	3	0	0	3	0	0	copy fasta	CHST2	chr3	143114771	143129014
CHST2_chr3_143114771_143129014	0/0	t0020	2550	3	3	0	0	0	0	copy fasta	CHST2	chr3	143114771	143129014
CHST2_chr3_143114771_143129014	0/0	t0021	2550	3	3	0	0	0	0	copy fasta	CHST2	chr3	143114771	143129014
CHST2_chr3_143114771_143129014	0/0	t0022	2550	2	0	0	2	0	0	copy fasta	CHST2	chr3	143114771	143129014
CHST2_chr3_143114771_143129014	0/0	t0023	2550	2	0	0	2	0	0	copy fasta	CHST2	chr3	143114771	143129014
CHST2_chr3_143114771_143129014	0/0	t0024	2550	2	0	0	2	0	0	copy fasta	CHST2	chr3	143114771	143129014
CHST2_chr3_143114771_143129014	0/0	t0025	2550	2	0	0	2	0	0	copy fasta	CHST2	chr3	143114771	143129014
CHST2_chr3_143114771_143129014	0/0	t0026	2550	2	2	0	0	0	0	copy fasta	CHST2	chr3	143114771	143129014
CHST2_chr3_143114771_143129014	0/0	t0027	2550	2	2	0	0	0	0	copy fasta	CHST2	chr3	143114771	143129014
CHST2_chr3_143114771_143129014	0/0	t0028	2550	2	0	0	0	0	2	copy fasta	CHST2	chr3	143114771	143129014
CHST2_chr3_143114771_143129014	0/0	t0029	2550	1	0	0	1	0	0	copy fasta	CHST2	chr3	143114771	143129014
CHST2_chr3_143114771_143129014	0/0	t0030	2550	1	0	1	0	0	0	copy fasta	CHST2	chr3	143114771	143129014
CHST2_chr3_143114771_143129014	0/0	t0031	2550	1	0	0	1	0	0	copy fasta	CHST2	chr3	143114771	143129014
CHST2_chr3_143114771_143129014	0/0	t0032	2549	1	0	0	1	0	0	copy fasta	CHST2	chr3	143114771	143129014
CHST2_chr3_143114771_143129014	0/0	t0033	2550	1	0	0	1	0	0	copy fasta	CHST2	chr3	143114771	143129014
CHST2_chr3_143114771_143129014	0/0	t0034	2550	1	0	0	0	0	1	copy fasta	CHST2	chr3	143114771	143129014
CHST2_chr3_143114771_143129014	0/0	t0035	2550	1	0	1	0	0	0	copy fasta	CHST2	chr3	143114771	143129014
CHST2_chr3_143114771_143129014	0/0	t0036	2550	1	0	0	1	0	0	copy fasta	CHST2	chr3	143114771	143129014
CHST2_chr3_143114771_143129014	0/0	t0037	2550	1	1	0	0	0	0	copy fasta	CHST2	chr3	143114771	143129014
CHST2_chr3_143114771_143129014	0/0	t0038	2550	1	1	0	0	0	0	copy fasta	CHST2	chr3	143114771	143129014
CHST2_chr3_143114771_143129014	0/0	t0039	2550	1	0	1	0	0	0	copy fasta	CHST2	chr3	143114771	143129014
CHST2_chr3_143114771_143129014	0/0	t0040	2550	1	0	0	1	0	0	copy fasta	CHST2	chr3	143114771	143129014
CHST2_chr3_143114771_143129014	0/0	t0041	2550	1	0	0	1	0	0	copy fasta	CHST2	chr3	143114771	143129014
CHST2_chr3_143114771_143129014	0/0	t0042	2550	1	1	0	0	0	0	copy fasta	CHST2	chr3	143114771	143129014
CHST2_chr3_143114771_143129014	0/0	t0043	2550	1	1	0	0	0	0	copy fasta	CHST2	chr3	143114771	143129014
CHST2_chr3_143114771_143129014	0/0	t0044	2550	1	0	0	0	0	1	copy fasta	CHST2	chr3	143114771	143129014
CHST2_chr3_143114771_143129014	0/0	t0045	2550	1	1	0	0	0	0	copy fasta	CHST2	chr3	143114771	143129014
CHST2_chr3_143114771_143129014	0/0	t0046	2550	1	1	0	0	0	0	copy fasta	CHST2	chr3	143114771	143129014
CHST2_chr3_143114771_143129014	0/0	t0047	2550	1	0	0	1	0	0	copy fasta	CHST2	chr3	143114771	143129014
CHST2_chr3_143114771_143129014	0/0	t0048	2550	1	1	0	0	0	0	copy fasta	CHST2	chr3	143114771	143129014
CHST2_chr3_143114771_143129014	0/0	t0049	2550	1	1	0	0	0	0	copy fasta	CHST2	chr3	143114771	143129014
CHST2_chr3_143114771_143129014	0/0	t0050	2550	1	1	0	0	0	0	copy fasta	CHST2	chr3	143114771	143129014
CHST2_chr3_143114771_143129014	0/0	t0051	2550	1	0	0	1	0	0	copy fasta	CHST2	chr3	143114771	143129014
CHST2_chr3_143114771_143129014	0/0	t0052	2537	1	0	1	0	0	0	copy fasta	CHST2	chr3	143114771	143129014
CHST2_chr3_143114771_143129014	0/0	t0053	2550	1	1	0	0	0	0	copy fasta	CHST2	chr3	143114771	143129014
CHST2_chr3_143114771_143129014	0/0	t0054	2550	1	1	0	0	0	0	copy fasta	CHST2	chr3	143114771	143129014
CHST3_chr10_71959395_72018558	1/1	t0001	5495	82	6	10	50	0	14	copy fasta	CHST3	chr10	71959395	72018558