JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CHST3_chr10_71959395_72018558	0/0	t0002	5495	49	1	11	23	3	11	copy fasta	CHST3	chr10	71959395	72018558
CHST3_chr10_71959395_72018558	0/0	t0003	5495	36	5	6	17	3	5	copy fasta	CHST3	chr10	71959395	72018558
CHST3_chr10_71959395_72018558	0/0	t0004	5495	29	1	6	17	0	5	copy fasta	CHST3	chr10	71959395	72018558
CHST3_chr10_71959395_72018558	0/0	t0005	5495	20	6	1	12	1	0	copy fasta	CHST3	chr10	71959395	72018558
CHST3_chr10_71959395_72018558	0/0	t0006	5495	16	5	0	10	0	1	copy fasta	CHST3	chr10	71959395	72018558
CHST3_chr10_71959395_72018558	0/0	t0007	5495	15	3	7	1	2	2	copy fasta	CHST3	chr10	71959395	72018558
CHST3_chr10_71959395_72018558	0/0	t0008	5495	9	0	2	6	0	1	copy fasta	CHST3	chr10	71959395	72018558
CHST3_chr10_71959395_72018558	0/0	t0009	5495	6	5	1	0	0	0	copy fasta	CHST3	chr10	71959395	72018558
CHST3_chr10_71959395_72018558	0/0	t0010	5495	6	4	1	0	0	1	copy fasta	CHST3	chr10	71959395	72018558
CHST3_chr10_71959395_72018558	0/0	t0011	5495	6	6	0	0	0	0	copy fasta	CHST3	chr10	71959395	72018558
CHST3_chr10_71959395_72018558	0/0	t0012	5495	4	0	0	4	0	0	copy fasta	CHST3	chr10	71959395	72018558
CHST3_chr10_71959395_72018558	0/0	t0013	5495	4	0	0	4	0	0	copy fasta	CHST3	chr10	71959395	72018558
CHST3_chr10_71959395_72018558	0/0	t0014	5494	4	4	0	0	0	0	copy fasta	CHST3	chr10	71959395	72018558
CHST3_chr10_71959395_72018558	0/0	t0015	5494	4	3	1	0	0	0	copy fasta	CHST3	chr10	71959395	72018558
CHST3_chr10_71959395_72018558	0/0	t0016	5495	4	3	1	0	0	0	copy fasta	CHST3	chr10	71959395	72018558
CHST3_chr10_71959395_72018558	0/0	t0017	5495	3	0	3	0	0	0	copy fasta	CHST3	chr10	71959395	72018558
CHST3_chr10_71959395_72018558	0/0	t0018	5495	3	0	0	3	0	0	copy fasta	CHST3	chr10	71959395	72018558
CHST3_chr10_71959395_72018558	0/0	t0019	5495	3	3	0	0	0	0	copy fasta	CHST3	chr10	71959395	72018558
CHST3_chr10_71959395_72018558	0/0	t0020	5495	2	0	0	0	0	2	copy fasta	CHST3	chr10	71959395	72018558
CHST3_chr10_71959395_72018558	0/0	t0021	5495	2	0	0	2	0	0	copy fasta	CHST3	chr10	71959395	72018558
CHST3_chr10_71959395_72018558	0/0	t0022	5495	2	2	0	0	0	0	copy fasta	CHST3	chr10	71959395	72018558
CHST3_chr10_71959395_72018558	0/0	t0023	5497	2	2	0	0	0	0	copy fasta	CHST3	chr10	71959395	72018558
CHST3_chr10_71959395_72018558	0/0	t0024	5495	2	0	2	0	0	0	copy fasta	CHST3	chr10	71959395	72018558
CHST3_chr10_71959395_72018558	0/0	t0025	5495	2	2	0	0	0	0	copy fasta	CHST3	chr10	71959395	72018558
CHST3_chr10_71959395_72018558	0/0	t0026	5493	2	2	0	0	0	0	copy fasta	CHST3	chr10	71959395	72018558
CHST3_chr10_71959395_72018558	0/0	t0027	5493	2	2	0	0	0	0	copy fasta	CHST3	chr10	71959395	72018558
CHST3_chr10_71959395_72018558	0/0	t0028	5497	2	2	0	0	0	0	copy fasta	CHST3	chr10	71959395	72018558
CHST3_chr10_71959395_72018558	0/0	t0029	5495	2	0	0	2	0	0	copy fasta	CHST3	chr10	71959395	72018558
CHST3_chr10_71959395_72018558	0/0	t0030	5495	2	2	0	0	0	0	copy fasta	CHST3	chr10	71959395	72018558
CHST3_chr10_71959395_72018558	0/0	t0031	5495	2	2	0	0	0	0	copy fasta	CHST3	chr10	71959395	72018558
CHST3_chr10_71959395_72018558	0/0	t0032	5495	2	0	2	0	0	0	copy fasta	CHST3	chr10	71959395	72018558
CHST3_chr10_71959395_72018558	0/0	t0033	5495	1	1	0	0	0	0	copy fasta	CHST3	chr10	71959395	72018558
CHST3_chr10_71959395_72018558	0/0	t0034	5495	1	1	0	0	0	0	copy fasta	CHST3	chr10	71959395	72018558
CHST3_chr10_71959395_72018558	0/0	t0035	5495	1	1	0	0	0	0	copy fasta	CHST3	chr10	71959395	72018558
CHST3_chr10_71959395_72018558	0/0	t0036	5495	1	0	0	1	0	0	copy fasta	CHST3	chr10	71959395	72018558
CHST3_chr10_71959395_72018558	0/0	t0037	5495	1	1	0	0	0	0	copy fasta	CHST3	chr10	71959395	72018558
CHST3_chr10_71959395_72018558	0/0	t0038	5495	1	1	0	0	0	0	copy fasta	CHST3	chr10	71959395	72018558
CHST3_chr10_71959395_72018558	0/0	t0039	5495	1	0	1	0	0	0	copy fasta	CHST3	chr10	71959395	72018558
CHST3_chr10_71959395_72018558	0/0	t0040	5495	1	1	0	0	0	0	copy fasta	CHST3	chr10	71959395	72018558
CHST3_chr10_71959395_72018558	0/0	t0041	5495	1	0	0	0	0	1	copy fasta	CHST3	chr10	71959395	72018558
CHST3_chr10_71959395_72018558	0/0	t0042	5495	1	0	1	0	0	0	copy fasta	CHST3	chr10	71959395	72018558
CHST3_chr10_71959395_72018558	0/0	t0043	5495	1	0	1	0	0	0	copy fasta	CHST3	chr10	71959395	72018558
CHST3_chr10_71959395_72018558	0/0	t0044	5495	1	0	0	0	0	1	copy fasta	CHST3	chr10	71959395	72018558
CHST3_chr10_71959395_72018558	0/0	t0045	5495	1	0	0	1	0	0	copy fasta	CHST3	chr10	71959395	72018558
CHST3_chr10_71959395_72018558	0/0	t0046	5495	1	0	1	0	0	0	copy fasta	CHST3	chr10	71959395	72018558
CHST3_chr10_71959395_72018558	0/0	t0047	5493	1	1	0	0	0	0	copy fasta	CHST3	chr10	71959395	72018558
CHST3_chr10_71959395_72018558	0/0	t0048	5495	1	0	1	0	0	0	copy fasta	CHST3	chr10	71959395	72018558
CHST3_chr10_71959395_72018558	0/0	t0049	5495	1	1	0	0	0	0	copy fasta	CHST3	chr10	71959395	72018558
CHST3_chr10_71959395_72018558	0/0	t0050	5495	1	1	0	0	0	0	copy fasta	CHST3	chr10	71959395	72018558
CHST3_chr10_71959395_72018558	0/0	t0051	5495	1	1	0	0	0	0	copy fasta	CHST3	chr10	71959395	72018558