Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ADAT2_chr6_143417832_143455695	0/0	t0165	5673	1	1	0	0	0	0	copy fasta	ADAT2	chr6	143417832	143455695
ADAT2_chr6_143417832_143455695	0/0	t0166	5677	1	0	0	1	0	0	copy fasta	ADAT2	chr6	143417832	143455695
ADAT2_chr6_143417832_143455695	0/0	t0167	5663	1	0	1	0	0	0	copy fasta	ADAT2	chr6	143417832	143455695
ADAT2_chr6_143417832_143455695	0/0	t0168	5666	1	0	0	0	0	1	copy fasta	ADAT2	chr6	143417832	143455695
ADAT2_chr6_143417832_143455695	0/0	t0169	5704	1	0	0	1	0	0	copy fasta	ADAT2	chr6	143417832	143455695
ADAT2_chr6_143417832_143455695	0/0	t0170	5722	1	0	0	0	0	1	copy fasta	ADAT2	chr6	143417832	143455695
ADAT2_chr6_143417832_143455695	0/0	t0171	5700	1	0	0	1	0	0	copy fasta	ADAT2	chr6	143417832	143455695
ADAT2_chr6_143417832_143455695	0/0	t0172	5698	1	0	0	0	0	1	copy fasta	ADAT2	chr6	143417832	143455695
ADAT2_chr6_143417832_143455695	0/0	t0173	5704	1	0	0	1	0	0	copy fasta	ADAT2	chr6	143417832	143455695
ADAT2_chr6_143417832_143455695	0/0	t0174	5709	1	0	0	0	0	1	copy fasta	ADAT2	chr6	143417832	143455695
ADAT2_chr6_143417832_143455695	0/0	t0175	5684	1	0	0	0	0	1	copy fasta	ADAT2	chr6	143417832	143455695
ADAT2_chr6_143417832_143455695	0/0	t0176	5684	1	0	0	1	0	0	copy fasta	ADAT2	chr6	143417832	143455695
ADAT2_chr6_143417832_143455695	0/0	t0177	5687	1	0	1	0	0	0	copy fasta	ADAT2	chr6	143417832	143455695
ADAT2_chr6_143417832_143455695	0/0	t0178	5685	1	1	0	0	0	0	copy fasta	ADAT2	chr6	143417832	143455695
ADAT2_chr6_143417832_143455695	0/0	t0179	5694	1	0	0	1	0	0	copy fasta	ADAT2	chr6	143417832	143455695
ADAT2_chr6_143417832_143455695	0/0	t0180	5697	1	0	0	1	0	0	copy fasta	ADAT2	chr6	143417832	143455695
ADAT2_chr6_143417832_143455695	0/0	t0181	5686	1	0	0	1	0	0	copy fasta	ADAT2	chr6	143417832	143455695
ADAT2_chr6_143417832_143455695	0/0	t0182	5692	1	0	1	0	0	0	copy fasta	ADAT2	chr6	143417832	143455695
ADAT2_chr6_143417832_143455695	0/0	t0183	5686	1	1	0	0	0	0	copy fasta	ADAT2	chr6	143417832	143455695
ADAT2_chr6_143417832_143455695	0/0	t0184	5659	1	1	0	0	0	0	copy fasta	ADAT2	chr6	143417832	143455695
ADAT3_chr19_1900399_1918447	1/1	t0001	496	375	74	69	170	16	44	copy fasta	ADAT3	chr19	1900399	1918447
ADAT3_chr19_1900399_1918447	0/0	t0002	496	55	11	12	28	2	2	copy fasta	ADAT3	chr19	1900399	1918447
ADAT3_chr19_1900399_1918447	0/0	t0003	496	3	3	0	0	0	0	copy fasta	ADAT3	chr19	1900399	1918447
ADAT3_chr19_1900399_1918447	0/0	t0004	496	3	3	0	0	0	0	copy fasta	ADAT3	chr19	1900399	1918447
ADAT3_chr19_1900399_1918447	0/0	t0005	496	2	2	0	0	0	0	copy fasta	ADAT3	chr19	1900399	1918447
ADAT3_chr19_1900399_1918447	0/0	t0006	496	1	1	0	0	0	0	copy fasta	ADAT3	chr19	1900399	1918447
ADAT3_chr19_1900399_1918447	0/0	t0007	496	1	0	1	0	0	0	copy fasta	ADAT3	chr19	1900399	1918447
ADAT3_chr19_1900399_1918447	0/0	t0008	496	1	1	0	0	0	0	copy fasta	ADAT3	chr19	1900399	1918447
ADAT3_chr19_1900399_1918447	0/0	t0009	496	1	1	0	0	0	0	copy fasta	ADAT3	chr19	1900399	1918447
ADA_chr20_44614522_44656699	1/1	t0001	405	317	90	65	107	14	39	copy fasta	ADA	chr20	44614522	44656699
ADA_chr20_44614522_44656699	0/0	t0002	405	7	4	3	0	0	0	copy fasta	ADA	chr20	44614522	44656699
ADA_chr20_44614522_44656699	0/0	t0003	405	1	0	0	1	0	0	copy fasta	ADA	chr20	44614522	44656699
ADA_chr20_44614522_44656699	0/0	t0004	405	1	0	0	1	0	0	copy fasta	ADA	chr20	44614522	44656699
ADA_chr20_44614522_44656699	0/0	t0005	405	1	0	0	1	0	0	copy fasta	ADA	chr20	44614522	44656699
ADA_chr20_44614522_44656699	0/0	t0006	405	1	0	0	0	0	1	copy fasta	ADA	chr20	44614522	44656699
ADCK1_chr14_77795109_77940014	1/0	t0001	1697	121	23	20	58	6	13	copy fasta	ADCK1	chr14	77795109	77940014
ADCK1_chr14_77795109_77940014	0/0	t0002	1697	117	42	23	36	3	13	copy fasta	ADCK1	chr14	77795109	77940014
ADCK1_chr14_77795109_77940014	0/0	t0003	1697	13	9	0	0	2	2	copy fasta	ADCK1	chr14	77795109	77940014
ADCK1_chr14_77795109_77940014	0/0	t0004	1697	11	0	3	0	7	1	copy fasta	ADCK1	chr14	77795109	77940014
ADCK1_chr14_77795109_77940014	0/0	t0005	1697	7	4	1	1	0	1	copy fasta	ADCK1	chr14	77795109	77940014
ADCK1_chr14_77795109_77940014	0/0	t0006	1697	5	4	1	0	0	0	copy fasta	ADCK1	chr14	77795109	77940014
ADCK1_chr14_77795109_77940014	0/0	t0007	1697	4	0	0	4	0	0	copy fasta	ADCK1	chr14	77795109	77940014
ADCK1_chr14_77795109_77940014	0/0	t0008	1697	2	2	0	0	0	0	copy fasta	ADCK1	chr14	77795109	77940014
ADCK1_chr14_77795109_77940014	0/0	t0009	1697	2	2	0	0	0	0	copy fasta	ADCK1	chr14	77795109	77940014
ADCK1_chr14_77795109_77940014	0/1	t0010	1697	1	0	0	0	0	0	copy fasta	ADCK1	chr14	77795109	77940014
ADCK1_chr14_77795109_77940014	0/0	t0011	1697	1	1	0	0	0	0	copy fasta	ADCK1	chr14	77795109	77940014
ADCK1_chr14_77795109_77940014	0/0	t0012	1697	1	1	0	0	0	0	copy fasta	ADCK1	chr14	77795109	77940014
ADCK1_chr14_77795109_77940014	0/0	t0013	1697	1	0	0	1	0	0	copy fasta	ADCK1	chr14	77795109	77940014
ADCK2_chr7_140667945_140700110	1/1	t0001	694	209	54	46	70	15	22	copy fasta	ADCK2	chr7	140667945	140700110
ADCK2_chr7_140667945_140700110	0/0	t0002	699	58	26	11	13	1	7	copy fasta	ADCK2	chr7	140667945	140700110