JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CHST3_chr10_71959395_72018558	0/0	t0052	5495	1	1	0	0	0	0	copy fasta	CHST3	chr10	71959395	72018558
CHST3_chr10_71959395_72018558	0/0	t0053	5495	1	0	0	1	0	0	copy fasta	CHST3	chr10	71959395	72018558
CHST3_chr10_71959395_72018558	0/0	t0054	5495	1	0	0	1	0	0	copy fasta	CHST3	chr10	71959395	72018558
CHST3_chr10_71959395_72018558	0/0	t0055	5495	1	0	0	1	0	0	copy fasta	CHST3	chr10	71959395	72018558
CHST3_chr10_71959395_72018558	0/0	t0056	5495	1	1	0	0	0	0	copy fasta	CHST3	chr10	71959395	72018558
CHST3_chr10_71959395_72018558	0/0	t0057	5495	1	0	0	1	0	0	copy fasta	CHST3	chr10	71959395	72018558
CHST3_chr10_71959395_72018558	0/0	t0058	5495	1	1	0	0	0	0	copy fasta	CHST3	chr10	71959395	72018558
CHST3_chr10_71959395_72018558	0/0	t0059	5495	1	1	0	0	0	0	copy fasta	CHST3	chr10	71959395	72018558
CHST3_chr10_71959395_72018558	0/0	t0060	5495	1	0	1	0	0	0	copy fasta	CHST3	chr10	71959395	72018558
CHST3_chr10_71959395_72018558	0/0	t0061	5495	1	0	0	0	0	1	copy fasta	CHST3	chr10	71959395	72018558
CHST3_chr10_71959395_72018558	0/0	t0062	5495	1	0	0	0	1	0	copy fasta	CHST3	chr10	71959395	72018558
CHST3_chr10_71959395_72018558	0/0	t0063	5495	1	0	0	1	0	0	copy fasta	CHST3	chr10	71959395	72018558
CHST3_chr10_71959395_72018558	0/0	t0064	5495	1	0	0	1	0	0	copy fasta	CHST3	chr10	71959395	72018558
CHST3_chr10_71959395_72018558	0/0	t0065	5495	1	0	0	0	0	1	copy fasta	CHST3	chr10	71959395	72018558
CHST3_chr10_71959395_72018558	0/0	t0066	5495	1	0	0	1	0	0	copy fasta	CHST3	chr10	71959395	72018558
CHST3_chr10_71959395_72018558	0/0	t0067	5495	1	1	0	0	0	0	copy fasta	CHST3	chr10	71959395	72018558
CHST3_chr10_71959395_72018558	0/0	t0068	5494	1	1	0	0	0	0	copy fasta	CHST3	chr10	71959395	72018558
CHST3_chr10_71959395_72018558	0/0	t0069	5495	1	1	0	0	0	0	copy fasta	CHST3	chr10	71959395	72018558
CHST3_chr10_71959395_72018558	0/0	t0070	5494	1	1	0	0	0	0	copy fasta	CHST3	chr10	71959395	72018558
CHST3_chr10_71959395_72018558	0/0	t0071	5494	1	0	1	0	0	0	copy fasta	CHST3	chr10	71959395	72018558
CHST3_chr10_71959395_72018558	0/0	t0072	5495	1	1	0	0	0	0	copy fasta	CHST3	chr10	71959395	72018558
CHST3_chr10_71959395_72018558	0/0	t0073	5495	1	1	0	0	0	0	copy fasta	CHST3	chr10	71959395	72018558
CHST3_chr10_71959395_72018558	0/0	t0074	5495	1	0	1	0	0	0	copy fasta	CHST3	chr10	71959395	72018558
CHST3_chr10_71959395_72018558	0/0	t0075	5495	1	1	0	0	0	0	copy fasta	CHST3	chr10	71959395	72018558
CHST4_chr16_71521426_71543748	1/1	t0001	999	400	86	71	184	14	43	copy fasta	CHST4	chr16	71521426	71543748
CHST4_chr16_71521426_71543748	0/0	t0002	999	7	7	0	0	0	0	copy fasta	CHST4	chr16	71521426	71543748
CHST4_chr16_71521426_71543748	0/0	t0003	999	5	0	5	0	0	0	copy fasta	CHST4	chr16	71521426	71543748
CHST4_chr16_71521426_71543748	0/0	t0004	999	1	0	0	1	0	0	copy fasta	CHST4	chr16	71521426	71543748
CHST4_chr16_71521426_71543748	0/0	t0005	999	1	1	0	0	0	0	copy fasta	CHST4	chr16	71521426	71543748
CHST4_chr16_71521426_71543748	0/0	t0006	999	1	1	0	0	0	0	copy fasta	CHST4	chr16	71521426	71543748
CHST4_chr16_71521426_71543748	0/0	t0007	999	1	1	0	0	0	0	copy fasta	CHST4	chr16	71521426	71543748
CHST4_chr16_71521426_71543748	0/0	t0008	999	1	0	0	1	0	0	copy fasta	CHST4	chr16	71521426	71543748
CHST4_chr16_71521426_71543748	0/0	t0009	999	1	0	0	0	0	1	copy fasta	CHST4	chr16	71521426	71543748
CHST5_chr16_75523530_75541108	0/0	t0001	2320	119	1	25	83	0	10	copy fasta	CHST5	chr16	75523530	75541108
CHST5_chr16_75523530_75541108	1/0	t0002	2319	85	18	26	10	10	20	copy fasta	CHST5	chr16	75523530	75541108
CHST5_chr16_75523530_75541108	0/1	t0003	2320	66	10	9	35	4	7	copy fasta	CHST5	chr16	75523530	75541108
CHST5_chr16_75523530_75541108	0/0	t0004	2319	19	11	1	6	0	1	copy fasta	CHST5	chr16	75523530	75541108
CHST5_chr16_75523530_75541108	0/0	t0005	2319	15	11	4	0	0	0	copy fasta	CHST5	chr16	75523530	75541108
CHST5_chr16_75523530_75541108	0/0	t0006	2319	13	6	2	3	1	1	copy fasta	CHST5	chr16	75523530	75541108
CHST5_chr16_75523530_75541108	0/0	t0007	2319	11	0	7	0	1	3	copy fasta	CHST5	chr16	75523530	75541108
CHST5_chr16_75523530_75541108	0/0	t0008	2321	7	0	1	4	0	2	copy fasta	CHST5	chr16	75523530	75541108
CHST5_chr16_75523530_75541108	0/0	t0009	2320	4	4	0	0	0	0	copy fasta	CHST5	chr16	75523530	75541108
CHST5_chr16_75523530_75541108	0/0	t0010	2319	4	4	0	0	0	0	copy fasta	CHST5	chr16	75523530	75541108
CHST5_chr16_75523530_75541108	0/0	t0011	2319	4	4	0	0	0	0	copy fasta	CHST5	chr16	75523530	75541108
CHST5_chr16_75523530_75541108	0/0	t0012	2319	3	3	0	0	0	0	copy fasta	CHST5	chr16	75523530	75541108
CHST5_chr16_75523530_75541108	0/0	t0013	2323	3	3	0	0	0	0	copy fasta	CHST5	chr16	75523530	75541108
CHST5_chr16_75523530_75541108	0/0	t0014	2320	3	0	0	3	0	0	copy fasta	CHST5	chr16	75523530	75541108
CHST5_chr16_75523530_75541108	0/0	t0015	2321	2	1	0	1	0	0	copy fasta	CHST5	chr16	75523530	75541108
CHST5_chr16_75523530_75541108	0/0	t0016	2323	2	2	0	0	0	0	copy fasta	CHST5	chr16	75523530	75541108
CHST5_chr16_75523530_75541108	0/0	t0017	2323	2	2	0	0	0	0	copy fasta	CHST5	chr16	75523530	75541108