JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CHST5_chr16_75523530_75541108	0/0	t0018	2319	2	2	0	0	0	0	copy fasta	CHST5	chr16	75523530	75541108
CHST5_chr16_75523530_75541108	0/0	t0019	2320	2	0	0	2	0	0	copy fasta	CHST5	chr16	75523530	75541108
CHST5_chr16_75523530_75541108	0/0	t0020	2320	2	0	0	2	0	0	copy fasta	CHST5	chr16	75523530	75541108
CHST5_chr16_75523530_75541108	0/0	t0021	2319	2	2	0	0	0	0	copy fasta	CHST5	chr16	75523530	75541108
CHST5_chr16_75523530_75541108	0/0	t0022	2320	2	0	1	1	0	0	copy fasta	CHST5	chr16	75523530	75541108
CHST5_chr16_75523530_75541108	0/0	t0023	2320	1	0	1	0	0	0	copy fasta	CHST5	chr16	75523530	75541108
CHST5_chr16_75523530_75541108	0/0	t0024	2320	1	0	1	0	0	0	copy fasta	CHST5	chr16	75523530	75541108
CHST5_chr16_75523530_75541108	0/0	t0025	2319	1	0	1	0	0	0	copy fasta	CHST5	chr16	75523530	75541108
CHST5_chr16_75523530_75541108	0/0	t0026	2323	1	1	0	0	0	0	copy fasta	CHST5	chr16	75523530	75541108
CHST5_chr16_75523530_75541108	0/0	t0027	2319	1	1	0	0	0	0	copy fasta	CHST5	chr16	75523530	75541108
CHST5_chr16_75523530_75541108	0/0	t0028	2319	1	1	0	0	0	0	copy fasta	CHST5	chr16	75523530	75541108
CHST5_chr16_75523530_75541108	0/0	t0029	2319	1	0	1	0	0	0	copy fasta	CHST5	chr16	75523530	75541108
CHST5_chr16_75523530_75541108	0/0	t0030	2320	1	1	0	0	0	0	copy fasta	CHST5	chr16	75523530	75541108
CHST5_chr16_75523530_75541108	0/0	t0031	2319	1	1	0	0	0	0	copy fasta	CHST5	chr16	75523530	75541108
CHST5_chr16_75523530_75541108	0/0	t0032	2319	1	1	0	0	0	0	copy fasta	CHST5	chr16	75523530	75541108
CHST5_chr16_75523530_75541108	0/0	t0033	2320	1	0	0	1	0	0	copy fasta	CHST5	chr16	75523530	75541108
CHST5_chr16_75523530_75541108	0/0	t0034	2320	1	0	0	1	0	0	copy fasta	CHST5	chr16	75523530	75541108
CHST5_chr16_75523530_75541108	0/0	t0035	2320	1	0	0	0	0	1	copy fasta	CHST5	chr16	75523530	75541108
CHST5_chr16_75523530_75541108	0/0	t0036	2321	1	0	0	1	0	0	copy fasta	CHST5	chr16	75523530	75541108
CHST5_chr16_75523530_75541108	0/0	t0037	2321	1	0	0	1	0	0	copy fasta	CHST5	chr16	75523530	75541108
CHST5_chr16_75523530_75541108	0/0	t0038	2319	1	0	1	0	0	0	copy fasta	CHST5	chr16	75523530	75541108
CHST5_chr16_75523530_75541108	0/0	t0039	2319	1	0	1	0	0	0	copy fasta	CHST5	chr16	75523530	75541108
CHST5_chr16_75523530_75541108	0/0	t0040	2319	1	0	1	0	0	0	copy fasta	CHST5	chr16	75523530	75541108
CHST5_chr16_75523530_75541108	0/0	t0041	2319	1	0	1	0	0	0	copy fasta	CHST5	chr16	75523530	75541108
CHST5_chr16_75523530_75541108	0/0	t0042	2319	1	1	0	0	0	0	copy fasta	CHST5	chr16	75523530	75541108
CHST5_chr16_75523530_75541108	0/0	t0043	2319	1	0	0	0	0	1	copy fasta	CHST5	chr16	75523530	75541108
CHST5_chr16_75523530_75541108	0/0	t0044	2319	1	1	0	0	0	0	copy fasta	CHST5	chr16	75523530	75541108
CHST6_chr16_75467052_75500441	0/0	t0001	7181	47	3	9	35	0	0	copy fasta	CHST6	chr16	75467052	75500441
CHST6_chr16_75467052_75500441	0/0	t0002	7182	42	5	6	29	0	2	copy fasta	CHST6	chr16	75467052	75500441
CHST6_chr16_75467052_75500441	0/0	t0003	7182	32	4	5	15	4	4	copy fasta	CHST6	chr16	75467052	75500441
CHST6_chr16_75467052_75500441	0/0	t0004	7182	17	3	7	2	1	4	copy fasta	CHST6	chr16	75467052	75500441
CHST6_chr16_75467052_75500441	0/0	t0005	7180	17	7	5	0	3	2	copy fasta	CHST6	chr16	75467052	75500441
CHST6_chr16_75467052_75500441	0/0	t0006	7183	13	3	1	7	0	2	copy fasta	CHST6	chr16	75467052	75500441
CHST6_chr16_75467052_75500441	0/0	t0007	7183	7	3	1	0	0	3	copy fasta	CHST6	chr16	75467052	75500441
CHST6_chr16_75467052_75500441	0/0	t0008	7181	7	0	3	4	0	0	copy fasta	CHST6	chr16	75467052	75500441
CHST6_chr16_75467052_75500441	0/0	t0009	7181	7	0	0	7	0	0	copy fasta	CHST6	chr16	75467052	75500441
CHST6_chr16_75467052_75500441	0/0	t0010	7180	6	2	0	0	2	2	copy fasta	CHST6	chr16	75467052	75500441
CHST6_chr16_75467052_75500441	0/0	t0011	7181	6	3	2	0	0	1	copy fasta	CHST6	chr16	75467052	75500441
CHST6_chr16_75467052_75500441	0/0	t0012	7183	6	0	2	1	1	2	copy fasta	CHST6	chr16	75467052	75500441
CHST6_chr16_75467052_75500441	0/0	t0013	7183	6	1	4	0	1	0	copy fasta	CHST6	chr16	75467052	75500441
CHST6_chr16_75467052_75500441	0/0	t0014	7178	6	5	1	0	0	0	copy fasta	CHST6	chr16	75467052	75500441
CHST6_chr16_75467052_75500441	0/0	t0015	7178	5	5	0	0	0	0	copy fasta	CHST6	chr16	75467052	75500441
CHST6_chr16_75467052_75500441	0/0	t0016	7181	5	1	1	3	0	0	copy fasta	CHST6	chr16	75467052	75500441
CHST6_chr16_75467052_75500441	0/0	t0017	7183	5	5	0	0	0	0	copy fasta	CHST6	chr16	75467052	75500441
CHST6_chr16_75467052_75500441	0/0	t0018	7182	5	0	0	4	0	1	copy fasta	CHST6	chr16	75467052	75500441
CHST6_chr16_75467052_75500441	0/0	t0019	7179	4	3	1	0	0	0	copy fasta	CHST6	chr16	75467052	75500441
CHST6_chr16_75467052_75500441	1/0	t0020	7183	4	3	0	0	0	0	copy fasta	CHST6	chr16	75467052	75500441
CHST6_chr16_75467052_75500441	0/0	t0021	7182	4	0	2	1	0	1	copy fasta	CHST6	chr16	75467052	75500441
CHST6_chr16_75467052_75500441	0/0	t0022	7181	4	4	0	0	0	0	copy fasta	CHST6	chr16	75467052	75500441
CHST6_chr16_75467052_75500441	0/0	t0023	7183	4	0	1	2	0	1	copy fasta	CHST6	chr16	75467052	75500441