JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CHST6_chr16_75467052_75500441	0/0	t0074	7182	1	1	0	0	0	0	copy fasta	CHST6	chr16	75467052	75500441
CHST6_chr16_75467052_75500441	0/0	t0075	7180	1	1	0	0	0	0	copy fasta	CHST6	chr16	75467052	75500441
CHST6_chr16_75467052_75500441	0/0	t0076	7169	1	0	0	1	0	0	copy fasta	CHST6	chr16	75467052	75500441
CHST6_chr16_75467052_75500441	0/0	t0077	7183	1	0	1	0	0	0	copy fasta	CHST6	chr16	75467052	75500441
CHST6_chr16_75467052_75500441	0/0	t0078	7181	1	0	0	0	0	1	copy fasta	CHST6	chr16	75467052	75500441
CHST6_chr16_75467052_75500441	0/0	t0079	7181	1	0	0	1	0	0	copy fasta	CHST6	chr16	75467052	75500441
CHST6_chr16_75467052_75500441	0/0	t0080	7182	1	0	0	1	0	0	copy fasta	CHST6	chr16	75467052	75500441
CHST6_chr16_75467052_75500441	0/0	t0081	7180	1	1	0	0	0	0	copy fasta	CHST6	chr16	75467052	75500441
CHST6_chr16_75467052_75500441	0/0	t0082	7180	1	1	0	0	0	0	copy fasta	CHST6	chr16	75467052	75500441
CHST6_chr16_75467052_75500441	0/0	t0083	7181	1	0	0	1	0	0	copy fasta	CHST6	chr16	75467052	75500441
CHST6_chr16_75467052_75500441	0/0	t0084	7181	1	0	1	0	0	0	copy fasta	CHST6	chr16	75467052	75500441
CHST6_chr16_75467052_75500441	0/0	t0085	7181	1	0	0	1	0	0	copy fasta	CHST6	chr16	75467052	75500441
CHST6_chr16_75467052_75500441	0/0	t0086	7181	1	0	0	1	0	0	copy fasta	CHST6	chr16	75467052	75500441
CHST6_chr16_75467052_75500441	0/0	t0087	7181	1	0	0	1	0	0	copy fasta	CHST6	chr16	75467052	75500441
CHST6_chr16_75467052_75500441	0/0	t0088	7181	1	0	0	1	0	0	copy fasta	CHST6	chr16	75467052	75500441
CHST6_chr16_75467052_75500441	0/0	t0089	7182	1	0	0	1	0	0	copy fasta	CHST6	chr16	75467052	75500441
CHST6_chr16_75467052_75500441	0/0	t0090	7182	1	0	0	0	1	0	copy fasta	CHST6	chr16	75467052	75500441
CHST6_chr16_75467052_75500441	0/0	t0091	7182	1	0	0	1	0	0	copy fasta	CHST6	chr16	75467052	75500441
CHST6_chr16_75467052_75500441	0/0	t0092	7181	1	0	0	1	0	0	copy fasta	CHST6	chr16	75467052	75500441
CHST6_chr16_75467052_75500441	0/0	t0093	7183	1	0	0	0	1	0	copy fasta	CHST6	chr16	75467052	75500441
CHST6_chr16_75467052_75500441	0/0	t0094	7184	1	0	0	0	1	0	copy fasta	CHST6	chr16	75467052	75500441
CHST6_chr16_75467052_75500441	0/0	t0095	7184	1	0	1	0	0	0	copy fasta	CHST6	chr16	75467052	75500441
CHST6_chr16_75467052_75500441	0/0	t0096	7184	1	0	1	0	0	0	copy fasta	CHST6	chr16	75467052	75500441
CHST6_chr16_75467052_75500441	0/0	t0097	7181	1	0	1	0	0	0	copy fasta	CHST6	chr16	75467052	75500441
CHST6_chr16_75467052_75500441	0/0	t0098	7179	1	1	0	0	0	0	copy fasta	CHST6	chr16	75467052	75500441
CHST6_chr16_75467052_75500441	0/0	t0099	7179	1	1	0	0	0	0	copy fasta	CHST6	chr16	75467052	75500441
CHST6_chr16_75467052_75500441	0/0	t0100	7184	1	1	0	0	0	0	copy fasta	CHST6	chr16	75467052	75500441
CHST6_chr16_75467052_75500441	0/0	t0101	7170	1	0	0	1	0	0	copy fasta	CHST6	chr16	75467052	75500441
CHST6_chr16_75467052_75500441	0/0	t0102	7181	1	0	0	1	0	0	copy fasta	CHST6	chr16	75467052	75500441
CHST6_chr16_75467052_75500441	0/0	t0103	7182	1	0	0	1	0	0	copy fasta	CHST6	chr16	75467052	75500441
CHST6_chr16_75467052_75500441	0/0	t0104	7182	1	0	0	1	0	0	copy fasta	CHST6	chr16	75467052	75500441
CHST6_chr16_75467052_75500441	0/0	t0105	7183	1	0	0	1	0	0	copy fasta	CHST6	chr16	75467052	75500441
CHST6_chr16_75467052_75500441	0/0	t0106	7184	1	0	0	0	0	1	copy fasta	CHST6	chr16	75467052	75500441
CHST6_chr16_75467052_75500441	0/0	t0107	7184	1	0	0	1	0	0	copy fasta	CHST6	chr16	75467052	75500441
CHST6_chr16_75467052_75500441	0/0	t0108	7184	1	1	0	0	0	0	copy fasta	CHST6	chr16	75467052	75500441
CHST6_chr16_75467052_75500441	0/0	t0109	7183	1	1	0	0	0	0	copy fasta	CHST6	chr16	75467052	75500441
CHST6_chr16_75467052_75500441	0/0	t0110	7182	1	0	0	1	0	0	copy fasta	CHST6	chr16	75467052	75500441
CHST6_chr16_75467052_75500441	0/0	t0111	7183	1	0	0	1	0	0	copy fasta	CHST6	chr16	75467052	75500441
CHST6_chr16_75467052_75500441	0/0	t0112	7183	1	0	0	1	0	0	copy fasta	CHST6	chr16	75467052	75500441
CHST6_chr16_75467052_75500441	0/0	t0113	7182	1	1	0	0	0	0	copy fasta	CHST6	chr16	75467052	75500441
CHST6_chr16_75467052_75500441	0/0	t0114	7183	1	0	0	1	0	0	copy fasta	CHST6	chr16	75467052	75500441
CHST6_chr16_75467052_75500441	0/0	t0115	7182	1	0	0	1	0	0	copy fasta	CHST6	chr16	75467052	75500441
CHST6_chr16_75467052_75500441	0/0	t0116	7182	1	0	0	1	0	0	copy fasta	CHST6	chr16	75467052	75500441
CHST7_chrX_46568765_46603496	0/0	t0001	936	225	65	40	91	9	20	copy fasta	CHST7	chrX	46568765	46603496
CHST7_chrX_46568765_46603496	1/1	t0002	936	72	2	15	41	4	8	copy fasta	CHST7	chrX	46568765	46603496
CHST7_chrX_46568765_46603496	0/0	t0003	936	8	2	2	4	0	0	copy fasta	CHST7	chrX	46568765	46603496
CHST7_chrX_46568765_46603496	0/0	t0004	936	2	0	0	2	0	0	copy fasta	CHST7	chrX	46568765	46603496
CHST7_chrX_46568765_46603496	0/0	t0005	936	1	0	0	1	0	0	copy fasta	CHST7	chrX	46568765	46603496
CHST7_chrX_46568765_46603496	0/0	t0006	931	1	1	0	0	0	0	copy fasta	CHST7	chrX	46568765	46603496
CHST7_chrX_46568765_46603496	0/0	t0007	940	1	0	0	1	0	0	copy fasta	CHST7	chrX	46568765	46603496