JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CHST7_chrX_46568765_46603496	0/0	t0008	936	1	0	0	1	0	0	copy fasta	CHST7	chrX	46568765	46603496
CHST8_chr19_33616953_33778506	1/1	t0001	951	189	74	35	45	13	20	copy fasta	CHST8	chr19	33616953	33778506
CHST8_chr19_33616953_33778506	0/0	t0002	951	25	2	8	11	0	4	copy fasta	CHST8	chr19	33616953	33778506
CHST8_chr19_33616953_33778506	0/0	t0003	951	21	10	6	0	1	4	copy fasta	CHST8	chr19	33616953	33778506
CHST8_chr19_33616953_33778506	0/0	t0004	951	10	0	4	3	2	1	copy fasta	CHST8	chr19	33616953	33778506
CHST8_chr19_33616953_33778506	0/0	t0005	951	2	0	2	0	0	0	copy fasta	CHST8	chr19	33616953	33778506
CHST8_chr19_33616953_33778506	0/0	t0006	951	1	0	0	0	0	1	copy fasta	CHST8	chr19	33616953	33778506
CHST8_chr19_33616953_33778506	0/0	t0007	951	1	1	0	0	0	0	copy fasta	CHST8	chr19	33616953	33778506
CHST8_chr19_33616953_33778506	0/0	t0008	951	1	0	0	1	0	0	copy fasta	CHST8	chr19	33616953	33778506
CHST8_chr19_33616953_33778506	0/0	t0009	951	1	0	0	1	0	0	copy fasta	CHST8	chr19	33616953	33778506
CHST8_chr19_33616953_33778506	0/0	t0010	951	1	1	0	0	0	0	copy fasta	CHST8	chr19	33616953	33778506
CHST8_chr19_33616953_33778506	0/0	t0011	951	1	0	0	1	0	0	copy fasta	CHST8	chr19	33616953	33778506
CHST8_chr19_33616953_33778506	0/0	t0012	951	1	0	1	0	0	0	copy fasta	CHST8	chr19	33616953	33778506
CHST9_chr18_26901481_27190308	0/0	t0001	10043	22	2	5	14	0	1	copy fasta	CHST9	chr18	26901481	27190308
CHST9_chr18_26901481_27190308	1/0	t0002	10048	20	1	6	9	1	2	copy fasta	CHST9	chr18	26901481	27190308
CHST9_chr18_26901481_27190308	0/0	t0003	10043	20	4	7	4	1	4	copy fasta	CHST9	chr18	26901481	27190308
CHST9_chr18_26901481_27190308	0/0	t0004	10032	20	3	4	12	1	0	copy fasta	CHST9	chr18	26901481	27190308
CHST9_chr18_26901481_27190308	0/0	t0005	10032	12	2	2	1	2	5	copy fasta	CHST9	chr18	26901481	27190308
CHST9_chr18_26901481_27190308	0/0	t0006	10042	11	2	1	6	0	2	copy fasta	CHST9	chr18	26901481	27190308
CHST9_chr18_26901481_27190308	0/0	t0007	10030	7	6	1	0	0	0	copy fasta	CHST9	chr18	26901481	27190308
CHST9_chr18_26901481_27190308	0/0	t0008	10040	6	2	0	2	0	2	copy fasta	CHST9	chr18	26901481	27190308
CHST9_chr18_26901481_27190308	0/0	t0009	10047	6	0	2	4	0	0	copy fasta	CHST9	chr18	26901481	27190308
CHST9_chr18_26901481_27190308	0/0	t0010	10040	5	0	4	0	0	1	copy fasta	CHST9	chr18	26901481	27190308
CHST9_chr18_26901481_27190308	0/0	t0011	10045	5	0	1	2	0	2	copy fasta	CHST9	chr18	26901481	27190308
CHST9_chr18_26901481_27190308	0/0	t0012	10043	5	0	0	5	0	0	copy fasta	CHST9	chr18	26901481	27190308
CHST9_chr18_26901481_27190308	0/0	t0013	10035	5	0	1	1	0	3	copy fasta	CHST9	chr18	26901481	27190308
CHST9_chr18_26901481_27190308	0/0	t0014	10043	4	2	2	0	0	0	copy fasta	CHST9	chr18	26901481	27190308
CHST9_chr18_26901481_27190308	0/0	t0015	10039	4	0	3	1	0	0	copy fasta	CHST9	chr18	26901481	27190308
CHST9_chr18_26901481_27190308	0/0	t0016	10032	4	0	0	4	0	0	copy fasta	CHST9	chr18	26901481	27190308
CHST9_chr18_26901481_27190308	0/0	t0017	10030	4	4	0	0	0	0	copy fasta	CHST9	chr18	26901481	27190308
CHST9_chr18_26901481_27190308	0/0	t0018	10050	3	0	0	3	0	0	copy fasta	CHST9	chr18	26901481	27190308
CHST9_chr18_26901481_27190308	0/0	t0019	10036	3	3	0	0	0	0	copy fasta	CHST9	chr18	26901481	27190308
CHST9_chr18_26901481_27190308	0/0	t0020	10028	3	0	2	0	0	1	copy fasta	CHST9	chr18	26901481	27190308
CHST9_chr18_26901481_27190308	0/0	t0021	10043	3	0	0	2	1	0	copy fasta	CHST9	chr18	26901481	27190308
CHST9_chr18_26901481_27190308	0/0	t0022	10043	3	0	0	2	0	1	copy fasta	CHST9	chr18	26901481	27190308
CHST9_chr18_26901481_27190308	0/0	t0023	10039	3	3	0	0	0	0	copy fasta	CHST9	chr18	26901481	27190308
CHST9_chr18_26901481_27190308	0/0	t0024	10034	3	0	2	0	1	0	copy fasta	CHST9	chr18	26901481	27190308
CHST9_chr18_26901481_27190308	0/0	t0025	10030	3	1	0	2	0	0	copy fasta	CHST9	chr18	26901481	27190308
CHST9_chr18_26901481_27190308	0/0	t0026	10032	2	0	0	0	0	2	copy fasta	CHST9	chr18	26901481	27190308
CHST9_chr18_26901481_27190308	0/0	t0027	10031	2	2	0	0	0	0	copy fasta	CHST9	chr18	26901481	27190308
CHST9_chr18_26901481_27190308	0/0	t0028	10048	2	1	1	0	0	0	copy fasta	CHST9	chr18	26901481	27190308
CHST9_chr18_26901481_27190308	0/0	t0029	10039	2	2	0	0	0	0	copy fasta	CHST9	chr18	26901481	27190308
CHST9_chr18_26901481_27190308	0/0	t0030	10036	2	1	0	1	0	0	copy fasta	CHST9	chr18	26901481	27190308
CHST9_chr18_26901481_27190308	0/0	t0031	10049	2	0	0	2	0	0	copy fasta	CHST9	chr18	26901481	27190308
CHST9_chr18_26901481_27190308	0/0	t0032	10037	2	1	1	0	0	0	copy fasta	CHST9	chr18	26901481	27190308
CHST9_chr18_26901481_27190308	0/0	t0033	10046	2	2	0	0	0	0	copy fasta	CHST9	chr18	26901481	27190308
CHST9_chr18_26901481_27190308	0/0	t0034	10047	2	2	0	0	0	0	copy fasta	CHST9	chr18	26901481	27190308
CHST9_chr18_26901481_27190308	0/0	t0035	10041	2	2	0	0	0	0	copy fasta	CHST9	chr18	26901481	27190308
CHST9_chr18_26901481_27190308	0/0	t0036	10041	2	2	0	0	0	0	copy fasta	CHST9	chr18	26901481	27190308
CHST9_chr18_26901481_27190308	0/0	t0037	10030	2	0	0	2	0	0	copy fasta	CHST9	chr18	26901481	27190308