JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CHST9_chr18_26901481_27190308	0/0	t0038	10035	2	0	2	0	0	0	copy fasta	CHST9	chr18	26901481	27190308
CHST9_chr18_26901481_27190308	0/0	t0039	10048	1	1	0	0	0	0	copy fasta	CHST9	chr18	26901481	27190308
CHST9_chr18_26901481_27190308	0/0	t0040	10046	1	0	1	0	0	0	copy fasta	CHST9	chr18	26901481	27190308
CHST9_chr18_26901481_27190308	0/0	t0041	10049	1	1	0	0	0	0	copy fasta	CHST9	chr18	26901481	27190308
CHST9_chr18_26901481_27190308	0/0	t0042	10043	1	1	0	0	0	0	copy fasta	CHST9	chr18	26901481	27190308
CHST9_chr18_26901481_27190308	0/0	t0043	10041	1	1	0	0	0	0	copy fasta	CHST9	chr18	26901481	27190308
CHST9_chr18_26901481_27190308	0/0	t0044	10048	1	0	0	0	0	1	copy fasta	CHST9	chr18	26901481	27190308
CHST9_chr18_26901481_27190308	0/0	t0045	10046	1	0	1	0	0	0	copy fasta	CHST9	chr18	26901481	27190308
CHST9_chr18_26901481_27190308	0/0	t0046	10040	1	0	0	0	1	0	copy fasta	CHST9	chr18	26901481	27190308
CHST9_chr18_26901481_27190308	0/0	t0047	10038	1	0	1	0	0	0	copy fasta	CHST9	chr18	26901481	27190308
CHST9_chr18_26901481_27190308	0/0	t0048	10038	1	0	0	1	0	0	copy fasta	CHST9	chr18	26901481	27190308
CHST9_chr18_26901481_27190308	0/0	t0049	10032	1	1	0	0	0	0	copy fasta	CHST9	chr18	26901481	27190308
CHST9_chr18_26901481_27190308	0/0	t0050	10045	1	0	0	1	0	0	copy fasta	CHST9	chr18	26901481	27190308
CHST9_chr18_26901481_27190308	0/0	t0051	10041	1	1	0	0	0	0	copy fasta	CHST9	chr18	26901481	27190308
CHST9_chr18_26901481_27190308	0/0	t0052	10051	1	0	0	0	0	1	copy fasta	CHST9	chr18	26901481	27190308
CHST9_chr18_26901481_27190308	0/0	t0053	10049	1	0	0	1	0	0	copy fasta	CHST9	chr18	26901481	27190308
CHST9_chr18_26901481_27190308	0/0	t0054	10045	1	0	1	0	0	0	copy fasta	CHST9	chr18	26901481	27190308
CHST9_chr18_26901481_27190308	0/0	t0055	10043	1	1	0	0	0	0	copy fasta	CHST9	chr18	26901481	27190308
CHST9_chr18_26901481_27190308	0/0	t0056	10043	1	0	0	1	0	0	copy fasta	CHST9	chr18	26901481	27190308
CHST9_chr18_26901481_27190308	0/0	t0057	10043	1	1	0	0	0	0	copy fasta	CHST9	chr18	26901481	27190308
CHST9_chr18_26901481_27190308	0/0	t0058	10043	1	0	0	0	0	1	copy fasta	CHST9	chr18	26901481	27190308
CHST9_chr18_26901481_27190308	0/0	t0059	10041	1	0	0	1	0	0	copy fasta	CHST9	chr18	26901481	27190308
CHST9_chr18_26901481_27190308	0/0	t0060	10038	1	1	0	0	0	0	copy fasta	CHST9	chr18	26901481	27190308
CHST9_chr18_26901481_27190308	0/0	t0061	10046	1	1	0	0	0	0	copy fasta	CHST9	chr18	26901481	27190308
CHST9_chr18_26901481_27190308	0/0	t0062	10043	1	1	0	0	0	0	copy fasta	CHST9	chr18	26901481	27190308
CHST9_chr18_26901481_27190308	0/0	t0063	10013	1	0	0	1	0	0	copy fasta	CHST9	chr18	26901481	27190308
CHST9_chr18_26901481_27190308	0/0	t0064	10045	1	1	0	0	0	0	copy fasta	CHST9	chr18	26901481	27190308
CHST9_chr18_26901481_27190308	0/0	t0065	10043	1	1	0	0	0	0	copy fasta	CHST9	chr18	26901481	27190308
CHST9_chr18_26901481_27190308	0/0	t0066	10033	1	0	1	0	0	0	copy fasta	CHST9	chr18	26901481	27190308
CHST9_chr18_26901481_27190308	0/0	t0067	10047	1	0	0	0	0	1	copy fasta	CHST9	chr18	26901481	27190308
CHST9_chr18_26901481_27190308	0/0	t0068	10045	1	0	0	1	0	0	copy fasta	CHST9	chr18	26901481	27190308
CHST9_chr18_26901481_27190308	0/0	t0069	10045	1	0	0	1	0	0	copy fasta	CHST9	chr18	26901481	27190308
CHST9_chr18_26901481_27190308	0/0	t0070	10043	1	0	1	0	0	0	copy fasta	CHST9	chr18	26901481	27190308
CHST9_chr18_26901481_27190308	0/0	t0071	10043	1	0	0	1	0	0	copy fasta	CHST9	chr18	26901481	27190308
CHST9_chr18_26901481_27190308	0/0	t0072	10032	1	0	0	1	0	0	copy fasta	CHST9	chr18	26901481	27190308
CHST9_chr18_26901481_27190308	0/0	t0073	10030	1	1	0	0	0	0	copy fasta	CHST9	chr18	26901481	27190308
CHST9_chr18_26901481_27190308	0/0	t0074	10037	1	1	0	0	0	0	copy fasta	CHST9	chr18	26901481	27190308
CHST9_chr18_26901481_27190308	0/0	t0075	10037	1	1	0	0	0	0	copy fasta	CHST9	chr18	26901481	27190308
CHST9_chr18_26901481_27190308	0/0	t0076	10034	1	1	0	0	0	0	copy fasta	CHST9	chr18	26901481	27190308
CHST9_chr18_26901481_27190308	0/1	t0077	10032	1	0	0	0	0	0	copy fasta	CHST9	chr18	26901481	27190308
CHST9_chr18_26901481_27190308	0/0	t0078	10031	1	1	0	0	0	0	copy fasta	CHST9	chr18	26901481	27190308
CHST9_chr18_26901481_27190308	0/0	t0079	10032	1	0	0	0	0	1	copy fasta	CHST9	chr18	26901481	27190308
CHST9_chr18_26901481_27190308	0/0	t0080	10041	1	0	1	0	0	0	copy fasta	CHST9	chr18	26901481	27190308
CHST9_chr18_26901481_27190308	0/0	t0081	10035	1	1	0	0	0	0	copy fasta	CHST9	chr18	26901481	27190308
CHST9_chr18_26901481_27190308	0/0	t0082	10036	1	1	0	0	0	0	copy fasta	CHST9	chr18	26901481	27190308
CHST9_chr18_26901481_27190308	0/0	t0083	10048	1	0	0	1	0	0	copy fasta	CHST9	chr18	26901481	27190308
CHST9_chr18_26901481_27190308	0/0	t0084	10042	1	0	0	1	0	0	copy fasta	CHST9	chr18	26901481	27190308
CHST9_chr18_26901481_27190308	0/0	t0085	10049	1	1	0	0	0	0	copy fasta	CHST9	chr18	26901481	27190308
CHST9_chr18_26901481_27190308	0/0	t0086	10047	1	1	0	0	0	0	copy fasta	CHST9	chr18	26901481	27190308
CHST9_chr18_26901481_27190308	0/0	t0087	10045	1	1	0	0	0	0	copy fasta	CHST9	chr18	26901481	27190308