JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CHST9_chr18_26901481_27190308	0/0	t0088	10043	1	0	0	1	0	0	copy fasta	CHST9	chr18	26901481	27190308
CHST9_chr18_26901481_27190308	0/0	t0089	10032	1	1	0	0	0	0	copy fasta	CHST9	chr18	26901481	27190308
CHST9_chr18_26901481_27190308	0/0	t0090	10032	1	0	0	0	0	1	copy fasta	CHST9	chr18	26901481	27190308
CHSY1_chr15_101170727_101257048	0/0	t0001	2274	68	4	11	40	5	8	copy fasta	CHSY1	chr15	101170727	101257048
CHSY1_chr15_101170727_101257048	0/0	t0002	2273	63	5	7	46	1	4	copy fasta	CHSY1	chr15	101170727	101257048
CHSY1_chr15_101170727_101257048	0/0	t0003	2277	55	29	12	7	2	5	copy fasta	CHSY1	chr15	101170727	101257048
CHSY1_chr15_101170727_101257048	0/0	t0004	2272	43	6	15	11	3	8	copy fasta	CHSY1	chr15	101170727	101257048
CHSY1_chr15_101170727_101257048	0/0	t0005	2273	38	0	3	32	0	3	copy fasta	CHSY1	chr15	101170727	101257048
CHSY1_chr15_101170727_101257048	0/0	t0006	2279	14	0	3	11	0	0	copy fasta	CHSY1	chr15	101170727	101257048
CHSY1_chr15_101170727_101257048	0/0	t0007	2275	12	1	5	3	2	1	copy fasta	CHSY1	chr15	101170727	101257048
CHSY1_chr15_101170727_101257048	0/1	t0008	2273	11	7	2	1	0	0	copy fasta	CHSY1	chr15	101170727	101257048
CHSY1_chr15_101170727_101257048	0/0	t0009	2279	8	2	4	0	2	0	copy fasta	CHSY1	chr15	101170727	101257048
CHSY1_chr15_101170727_101257048	0/0	t0010	2253	7	0	0	7	0	0	copy fasta	CHSY1	chr15	101170727	101257048
CHSY1_chr15_101170727_101257048	0/0	t0011	2274	7	0	0	6	0	1	copy fasta	CHSY1	chr15	101170727	101257048
CHSY1_chr15_101170727_101257048	0/0	t0012	2273	6	0	6	0	0	0	copy fasta	CHSY1	chr15	101170727	101257048
CHSY1_chr15_101170727_101257048	0/0	t0013	2259	5	0	0	5	0	0	copy fasta	CHSY1	chr15	101170727	101257048
CHSY1_chr15_101170727_101257048	0/0	t0014	2283	5	2	2	0	1	0	copy fasta	CHSY1	chr15	101170727	101257048
CHSY1_chr15_101170727_101257048	0/0	t0015	2264	4	0	0	4	0	0	copy fasta	CHSY1	chr15	101170727	101257048
CHSY1_chr15_101170727_101257048	0/0	t0016	2273	4	0	1	1	0	2	copy fasta	CHSY1	chr15	101170727	101257048
CHSY1_chr15_101170727_101257048	0/0	t0017	2273	4	4	0	0	0	0	copy fasta	CHSY1	chr15	101170727	101257048
CHSY1_chr15_101170727_101257048	0/0	t0018	2267	3	2	1	0	0	0	copy fasta	CHSY1	chr15	101170727	101257048
CHSY1_chr15_101170727_101257048	0/0	t0019	2276	3	1	0	2	0	0	copy fasta	CHSY1	chr15	101170727	101257048
CHSY1_chr15_101170727_101257048	0/0	t0020	2278	3	0	2	0	1	0	copy fasta	CHSY1	chr15	101170727	101257048
CHSY1_chr15_101170727_101257048	0/0	t0021	2282	3	1	1	0	0	1	copy fasta	CHSY1	chr15	101170727	101257048
CHSY1_chr15_101170727_101257048	0/0	t0022	2277	2	0	0	2	0	0	copy fasta	CHSY1	chr15	101170727	101257048
CHSY1_chr15_101170727_101257048	0/0	t0023	2285	2	2	0	0	0	0	copy fasta	CHSY1	chr15	101170727	101257048
CHSY1_chr15_101170727_101257048	0/0	t0024	2258	2	0	0	2	0	0	copy fasta	CHSY1	chr15	101170727	101257048
CHSY1_chr15_101170727_101257048	0/0	t0025	2262	2	1	1	0	0	0	copy fasta	CHSY1	chr15	101170727	101257048
CHSY1_chr15_101170727_101257048	0/0	t0026	2266	2	1	0	1	0	0	copy fasta	CHSY1	chr15	101170727	101257048
CHSY1_chr15_101170727_101257048	0/0	t0027	2274	2	2	0	0	0	0	copy fasta	CHSY1	chr15	101170727	101257048
CHSY1_chr15_101170727_101257048	0/0	t0028	2282	2	0	0	2	0	0	copy fasta	CHSY1	chr15	101170727	101257048
CHSY1_chr15_101170727_101257048	0/0	t0029	2273	2	0	0	2	0	0	copy fasta	CHSY1	chr15	101170727	101257048
CHSY1_chr15_101170727_101257048	0/0	t0030	2267	2	2	0	0	0	0	copy fasta	CHSY1	chr15	101170727	101257048
CHSY1_chr15_101170727_101257048	0/0	t0031	2273	2	2	0	0	0	0	copy fasta	CHSY1	chr15	101170727	101257048
CHSY1_chr15_101170727_101257048	0/0	t0032	2280	2	0	0	2	0	0	copy fasta	CHSY1	chr15	101170727	101257048
CHSY1_chr15_101170727_101257048	0/0	t0033	2275	1	1	0	0	0	0	copy fasta	CHSY1	chr15	101170727	101257048
CHSY1_chr15_101170727_101257048	0/0	t0034	2267	1	1	0	0	0	0	copy fasta	CHSY1	chr15	101170727	101257048
CHSY1_chr15_101170727_101257048	0/0	t0035	2273	1	1	0	0	0	0	copy fasta	CHSY1	chr15	101170727	101257048
CHSY1_chr15_101170727_101257048	0/0	t0036	2277	1	1	0	0	0	0	copy fasta	CHSY1	chr15	101170727	101257048
CHSY1_chr15_101170727_101257048	0/0	t0037	2286	1	1	0	0	0	0	copy fasta	CHSY1	chr15	101170727	101257048
CHSY1_chr15_101170727_101257048	1/0	t0038	2254	1	0	0	0	0	0	copy fasta	CHSY1	chr15	101170727	101257048
CHSY1_chr15_101170727_101257048	0/0	t0039	2253	1	0	0	1	0	0	copy fasta	CHSY1	chr15	101170727	101257048
CHSY1_chr15_101170727_101257048	0/0	t0040	2253	1	0	0	1	0	0	copy fasta	CHSY1	chr15	101170727	101257048
CHSY1_chr15_101170727_101257048	0/0	t0041	2258	1	0	0	1	0	0	copy fasta	CHSY1	chr15	101170727	101257048
CHSY1_chr15_101170727_101257048	0/0	t0042	2268	1	1	0	0	0	0	copy fasta	CHSY1	chr15	101170727	101257048
CHSY1_chr15_101170727_101257048	0/0	t0043	2271	1	1	0	0	0	0	copy fasta	CHSY1	chr15	101170727	101257048
CHSY1_chr15_101170727_101257048	0/0	t0044	2268	1	0	0	1	0	0	copy fasta	CHSY1	chr15	101170727	101257048
CHSY1_chr15_101170727_101257048	0/0	t0045	2273	1	0	0	1	0	0	copy fasta	CHSY1	chr15	101170727	101257048
CHSY1_chr15_101170727_101257048	0/0	t0046	2273	1	0	0	1	0	0	copy fasta	CHSY1	chr15	101170727	101257048
CHSY1_chr15_101170727_101257048	0/0	t0047	2274	1	0	0	0	0	1	copy fasta	CHSY1	chr15	101170727	101257048