JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CHSY1_chr15_101170727_101257048	0/0	t0048	2274	1	0	0	1	0	0	copy fasta	CHSY1	chr15	101170727	101257048
CHSY1_chr15_101170727_101257048	0/0	t0049	2276	1	1	0	0	0	0	copy fasta	CHSY1	chr15	101170727	101257048
CHSY1_chr15_101170727_101257048	0/0	t0050	2276	1	0	0	1	0	0	copy fasta	CHSY1	chr15	101170727	101257048
CHSY1_chr15_101170727_101257048	0/0	t0051	2276	1	0	1	0	0	0	copy fasta	CHSY1	chr15	101170727	101257048
CHSY1_chr15_101170727_101257048	0/0	t0052	2280	1	0	1	0	0	0	copy fasta	CHSY1	chr15	101170727	101257048
CHSY1_chr15_101170727_101257048	0/0	t0053	2281	1	0	0	0	0	1	copy fasta	CHSY1	chr15	101170727	101257048
CHSY1_chr15_101170727_101257048	0/0	t0054	2276	1	0	0	0	1	0	copy fasta	CHSY1	chr15	101170727	101257048
CHSY1_chr15_101170727_101257048	0/0	t0055	2274	1	0	0	0	0	1	copy fasta	CHSY1	chr15	101170727	101257048
CHSY1_chr15_101170727_101257048	0/0	t0056	2259	1	1	0	0	0	0	copy fasta	CHSY1	chr15	101170727	101257048
CHSY1_chr15_101170727_101257048	0/0	t0057	2261	1	1	0	0	0	0	copy fasta	CHSY1	chr15	101170727	101257048
CHSY1_chr15_101170727_101257048	0/0	t0058	2273	1	0	0	1	0	0	copy fasta	CHSY1	chr15	101170727	101257048
CHSY1_chr15_101170727_101257048	0/0	t0059	2273	1	0	0	1	0	0	copy fasta	CHSY1	chr15	101170727	101257048
CHSY1_chr15_101170727_101257048	0/0	t0060	2273	1	1	0	0	0	0	copy fasta	CHSY1	chr15	101170727	101257048
CHSY1_chr15_101170727_101257048	0/0	t0061	2275	1	1	0	0	0	0	copy fasta	CHSY1	chr15	101170727	101257048
CHSY1_chr15_101170727_101257048	0/0	t0062	2273	1	1	0	0	0	0	copy fasta	CHSY1	chr15	101170727	101257048
CHSY1_chr15_101170727_101257048	0/0	t0063	2273	1	1	0	0	0	0	copy fasta	CHSY1	chr15	101170727	101257048
CHSY1_chr15_101170727_101257048	0/0	t0064	2273	1	1	0	0	0	0	copy fasta	CHSY1	chr15	101170727	101257048
CHSY1_chr15_101170727_101257048	0/0	t0065	2273	1	0	0	1	0	0	copy fasta	CHSY1	chr15	101170727	101257048
CHSY1_chr15_101170727_101257048	0/0	t0066	2277	1	1	0	0	0	0	copy fasta	CHSY1	chr15	101170727	101257048
CHSY3_chr5_129899465_130191634	0/0	t0001	1209	86	12	21	41	5	7	copy fasta	CHSY3	chr5	129899465	130191634
CHSY3_chr5_129899465_130191634	0/0	t0002	1209	75	11	15	41	2	6	copy fasta	CHSY3	chr5	129899465	130191634
CHSY3_chr5_129899465_130191634	0/0	t0003	1209	26	6	3	15	0	2	copy fasta	CHSY3	chr5	129899465	130191634
CHSY3_chr5_129899465_130191634	0/0	t0004	1209	25	11	3	8	0	3	copy fasta	CHSY3	chr5	129899465	130191634
CHSY3_chr5_129899465_130191634	0/0	t0005	1209	14	12	2	0	0	0	copy fasta	CHSY3	chr5	129899465	130191634
CHSY3_chr5_129899465_130191634	0/0	t0006	1209	14	7	2	0	3	2	copy fasta	CHSY3	chr5	129899465	130191634
CHSY3_chr5_129899465_130191634	0/0	t0007	1209	7	7	0	0	0	0	copy fasta	CHSY3	chr5	129899465	130191634
CHSY3_chr5_129899465_130191634	0/0	t0008	1209	4	3	1	0	0	0	copy fasta	CHSY3	chr5	129899465	130191634
CHSY3_chr5_129899465_130191634	0/0	t0009	1209	4	4	0	0	0	0	copy fasta	CHSY3	chr5	129899465	130191634
CHSY3_chr5_129899465_130191634	0/0	t0010	1209	4	4	0	0	0	0	copy fasta	CHSY3	chr5	129899465	130191634
CHSY3_chr5_129899465_130191634	0/0	t0011	1209	3	3	0	0	0	0	copy fasta	CHSY3	chr5	129899465	130191634
CHSY3_chr5_129899465_130191634	0/0	t0012	1209	3	3	0	0	0	0	copy fasta	CHSY3	chr5	129899465	130191634
CHSY3_chr5_129899465_130191634	0/0	t0013	1209	3	3	0	0	0	0	copy fasta	CHSY3	chr5	129899465	130191634
CHSY3_chr5_129899465_130191634	0/0	t0014	1209	2	0	0	2	0	0	copy fasta	CHSY3	chr5	129899465	130191634
CHSY3_chr5_129899465_130191634	0/0	t0015	1209	1	1	0	0	0	0	copy fasta	CHSY3	chr5	129899465	130191634
CHSY3_chr5_129899465_130191634	0/0	t0016	1209	1	1	0	0	0	0	copy fasta	CHSY3	chr5	129899465	130191634
CHSY3_chr5_129899465_130191634	0/0	t0017	1265	1	1	0	0	0	0	copy fasta	CHSY3	chr5	129899465	130191634
CHSY3_chr5_129899465_130191634	0/0	t0018	1209	1	1	0	0	0	0	copy fasta	CHSY3	chr5	129899465	130191634
CHSY3_chr5_129899465_130191634	0/0	t0019	1209	1	0	0	1	0	0	copy fasta	CHSY3	chr5	129899465	130191634
CHSY3_chr5_129899465_130191634	0/0	t0020	1209	1	0	1	0	0	0	copy fasta	CHSY3	chr5	129899465	130191634
CHTF18_chr16_783620_803074	1/1	t0001	165	392	78	76	178	17	41	copy fasta	CHTF18	chr16	783620	803074
CHTF18_chr16_783620_803074	0/0	t0002	165	25	11	5	3	0	6	copy fasta	CHTF18	chr16	783620	803074
CHTF18_chr16_783620_803074	0/0	t0003	165	5	5	0	0	0	0	copy fasta	CHTF18	chr16	783620	803074
CHTF18_chr16_783620_803074	0/0	t0004	165	2	0	1	0	0	1	copy fasta	CHTF18	chr16	783620	803074
CHTF18_chr16_783620_803074	0/0	t0005	165	1	0	0	0	1	0	copy fasta	CHTF18	chr16	783620	803074
CHTF18_chr16_783620_803074	0/0	t0006	165	1	0	0	1	0	0	copy fasta	CHTF18	chr16	783620	803074
CHTF18_chr16_783620_803074	0/0	t0007	165	1	1	0	0	0	0	copy fasta	CHTF18	chr16	783620	803074
CHTF18_chr16_783620_803074	0/0	t0008	165	1	1	0	0	0	0	copy fasta	CHTF18	chr16	783620	803074
CHTF8_chr16_69113010_69137588	1/1	t0001	2556	313	87	59	108	14	43	copy fasta	CHTF8	chr16	69113010	69137588
CHTF8_chr16_69113010_69137588	0/0	t0002	2556	29	0	7	21	0	1	copy fasta	CHTF8	chr16	69113010	69137588
CHTF8_chr16_69113010_69137588	0/0	t0003	2556	5	1	3	0	1	0	copy fasta	CHTF8	chr16	69113010	69137588