JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CHTF8_chr16_69113010_69137588	0/0	t0004	2556	4	3	1	0	0	0	copy fasta	CHTF8	chr16	69113010	69137588
CHTF8_chr16_69113010_69137588	0/0	t0005	2556	3	0	2	0	1	0	copy fasta	CHTF8	chr16	69113010	69137588
CHTF8_chr16_69113010_69137588	0/0	t0006	2556	2	0	1	0	0	1	copy fasta	CHTF8	chr16	69113010	69137588
CHTF8_chr16_69113010_69137588	0/0	t0007	2556	1	0	1	0	0	0	copy fasta	CHTF8	chr16	69113010	69137588
CHTF8_chr16_69113010_69137588	0/0	t0008	2556	1	1	0	0	0	0	copy fasta	CHTF8	chr16	69113010	69137588
CHTF8_chr16_69113010_69137588	0/0	t0009	2556	1	0	0	1	0	0	copy fasta	CHTF8	chr16	69113010	69137588
CHTF8_chr16_69113010_69137588	0/0	t0010	2556	1	1	0	0	0	0	copy fasta	CHTF8	chr16	69113010	69137588
CHTF8_chr16_69113010_69137588	0/0	t0011	2556	1	0	0	1	0	0	copy fasta	CHTF8	chr16	69113010	69137588
CHTF8_chr16_69113010_69137588	0/0	t0012	2556	1	1	0	0	0	0	copy fasta	CHTF8	chr16	69113010	69137588
CHTF8_chr16_69113010_69137588	0/0	t0013	2556	1	0	0	0	0	1	copy fasta	CHTF8	chr16	69113010	69137588
CHTF8_chr16_69113010_69137588	0/0	t0014	2556	1	0	0	1	0	0	copy fasta	CHTF8	chr16	69113010	69137588
CHTOP_chr1_153629066_153651306	0/0	t0001	1333	204	48	42	82	6	26	copy fasta	CHTOP	chr1	153629066	153651306
CHTOP_chr1_153629066_153651306	1/1	t0002	1333	133	35	17	59	5	15	copy fasta	CHTOP	chr1	153629066	153651306
CHTOP_chr1_153629066_153651306	0/0	t0003	1333	8	3	0	2	0	3	copy fasta	CHTOP	chr1	153629066	153651306
CHTOP_chr1_153629066_153651306	0/0	t0004	1333	6	4	2	0	0	0	copy fasta	CHTOP	chr1	153629066	153651306
CHTOP_chr1_153629066_153651306	0/0	t0005	1333	5	1	3	0	0	1	copy fasta	CHTOP	chr1	153629066	153651306
CHTOP_chr1_153629066_153651306	0/0	t0006	1333	4	0	0	4	0	0	copy fasta	CHTOP	chr1	153629066	153651306
CHTOP_chr1_153629066_153651306	0/0	t0007	1333	3	0	2	0	1	0	copy fasta	CHTOP	chr1	153629066	153651306
CHTOP_chr1_153629066_153651306	0/0	t0008	1333	3	0	2	0	0	1	copy fasta	CHTOP	chr1	153629066	153651306
CHTOP_chr1_153629066_153651306	0/0	t0009	1333	2	2	0	0	0	0	copy fasta	CHTOP	chr1	153629066	153651306
CHTOP_chr1_153629066_153651306	0/0	t0010	1333	2	2	0	0	0	0	copy fasta	CHTOP	chr1	153629066	153651306
CHTOP_chr1_153629066_153651306	0/0	t0011	1333	1	1	0	0	0	0	copy fasta	CHTOP	chr1	153629066	153651306
CHTOP_chr1_153629066_153651306	0/0	t0012	1333	1	0	0	1	0	0	copy fasta	CHTOP	chr1	153629066	153651306
CHUK_chr10_100183300_100234596	1/1	t0001	1363	398	89	71	188	10	38	copy fasta	CHUK	chr10	100183300	100234596
CHUK_chr10_100183300_100234596	0/0	t0002	1363	3	2	1	0	0	0	copy fasta	CHUK	chr10	100183300	100234596
CHUK_chr10_100183300_100234596	0/0	t0003	1363	1	1	0	0	0	0	copy fasta	CHUK	chr10	100183300	100234596
CHURC1_chr14_64909455_64940368	0/0	t0001	3181	133	32	10	80	3	8	copy fasta	CHURC1	chr14	64909455	64940368
CHURC1_chr14_64909455_64940368	1/1	t0002	3180	114	10	27	53	7	15	copy fasta	CHURC1	chr14	64909455	64940368
CHURC1_chr14_64909455_64940368	0/0	t0003	3180	32	6	15	2	2	7	copy fasta	CHURC1	chr14	64909455	64940368
CHURC1_chr14_64909455_64940368	0/0	t0004	3175	27	1	2	23	1	0	copy fasta	CHURC1	chr14	64909455	64940368
CHURC1_chr14_64909455_64940368	0/0	t0005	3180	17	4	0	7	0	6	copy fasta	CHURC1	chr14	64909455	64940368
CHURC1_chr14_64909455_64940368	0/0	t0006	3180	15	14	1	0	0	0	copy fasta	CHURC1	chr14	64909455	64940368
CHURC1_chr14_64909455_64940368	0/0	t0007	3180	10	8	2	0	0	0	copy fasta	CHURC1	chr14	64909455	64940368
CHURC1_chr14_64909455_64940368	0/0	t0008	3181	8	0	0	8	0	0	copy fasta	CHURC1	chr14	64909455	64940368
CHURC1_chr14_64909455_64940368	0/0	t0009	3181	5	0	3	0	0	2	copy fasta	CHURC1	chr14	64909455	64940368
CHURC1_chr14_64909455_64940368	0/0	t0010	3181	5	5	0	0	0	0	copy fasta	CHURC1	chr14	64909455	64940368
CHURC1_chr14_64909455_64940368	0/0	t0011	3177	4	4	0	0	0	0	copy fasta	CHURC1	chr14	64909455	64940368
CHURC1_chr14_64909455_64940368	0/0	t0012	3180	3	0	0	0	1	2	copy fasta	CHURC1	chr14	64909455	64940368
CHURC1_chr14_64909455_64940368	0/0	t0013	3180	3	2	1	0	0	0	copy fasta	CHURC1	chr14	64909455	64940368
CHURC1_chr14_64909455_64940368	0/0	t0014	3181	2	2	0	0	0	0	copy fasta	CHURC1	chr14	64909455	64940368
CHURC1_chr14_64909455_64940368	0/0	t0015	3180	2	2	0	0	0	0	copy fasta	CHURC1	chr14	64909455	64940368
CHURC1_chr14_64909455_64940368	0/0	t0016	3180	1	0	0	0	0	1	copy fasta	CHURC1	chr14	64909455	64940368
CHURC1_chr14_64909455_64940368	0/0	t0017	3180	1	0	0	1	0	0	copy fasta	CHURC1	chr14	64909455	64940368
CHURC1_chr14_64909455_64940368	0/0	t0018	3181	1	1	0	0	0	0	copy fasta	CHURC1	chr14	64909455	64940368
CHURC1_chr14_64909455_64940368	0/0	t0019	3181	1	0	0	1	0	0	copy fasta	CHURC1	chr14	64909455	64940368
CHURC1_chr14_64909455_64940368	0/0	t0020	3181	1	0	0	1	0	0	copy fasta	CHURC1	chr14	64909455	64940368
CHURC1_chr14_64909455_64940368	0/0	t0021	3180	1	0	0	0	0	1	copy fasta	CHURC1	chr14	64909455	64940368
CHURC1_chr14_64909455_64940368	0/0	t0022	3180	1	0	1	0	0	0	copy fasta	CHURC1	chr14	64909455	64940368
CHURC1_chr14_64909455_64940368	0/0	t0023	3180	1	0	0	0	0	1	copy fasta	CHURC1	chr14	64909455	64940368
CHURC1_chr14_64909455_64940368	0/0	t0024	3180	1	1	0	0	0	0	copy fasta	CHURC1	chr14	64909455	64940368