JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CHURC1_chr14_64909455_64940368	0/0	t0025	3180	1	1	0	0	0	0	copy fasta	CHURC1	chr14	64909455	64940368
CHURC1_chr14_64909455_64940368	0/0	t0026	3180	1	0	0	0	0	1	copy fasta	CHURC1	chr14	64909455	64940368
CHURC1_chr14_64909455_64940368	0/0	t0027	3182	1	1	0	0	0	0	copy fasta	CHURC1	chr14	64909455	64940368
CIAO1_chr2_96261225_96279173	1/1	t0001	2949	196	49	37	98	5	5	copy fasta	CIAO1	chr2	96261225	96279173
CIAO1_chr2_96261225_96279173	0/0	t0002	2949	119	9	23	57	2	28	copy fasta	CIAO1	chr2	96261225	96279173
CIAO1_chr2_96261225_96279173	0/0	t0003	2948	18	3	1	13	0	1	copy fasta	CIAO1	chr2	96261225	96279173
CIAO1_chr2_96261225_96279173	0/0	t0004	2950	16	10	0	5	0	1	copy fasta	CIAO1	chr2	96261225	96279173
CIAO1_chr2_96261225_96279173	0/0	t0005	2950	10	7	1	1	0	1	copy fasta	CIAO1	chr2	96261225	96279173
CIAO1_chr2_96261225_96279173	0/0	t0006	2949	9	3	1	4	0	1	copy fasta	CIAO1	chr2	96261225	96279173
CIAO1_chr2_96261225_96279173	0/0	t0007	2943	7	0	0	7	0	0	copy fasta	CIAO1	chr2	96261225	96279173
CIAO1_chr2_96261225_96279173	0/0	t0008	2948	4	0	0	4	0	0	copy fasta	CIAO1	chr2	96261225	96279173
CIAO1_chr2_96261225_96279173	0/0	t0009	2947	4	0	0	4	0	0	copy fasta	CIAO1	chr2	96261225	96279173
CIAO1_chr2_96261225_96279173	0/0	t0010	2949	3	0	2	0	0	1	copy fasta	CIAO1	chr2	96261225	96279173
CIAO1_chr2_96261225_96279173	0/0	t0011	2950	3	3	0	0	0	0	copy fasta	CIAO1	chr2	96261225	96279173
CIAO1_chr2_96261225_96279173	0/0	t0012	2949	2	0	1	0	0	1	copy fasta	CIAO1	chr2	96261225	96279173
CIAO1_chr2_96261225_96279173	0/0	t0013	2949	2	1	0	0	1	0	copy fasta	CIAO1	chr2	96261225	96279173
CIAO1_chr2_96261225_96279173	0/0	t0014	2949	1	0	0	0	0	1	copy fasta	CIAO1	chr2	96261225	96279173
CIAO1_chr2_96261225_96279173	0/0	t0015	2950	1	1	0	0	0	0	copy fasta	CIAO1	chr2	96261225	96279173
CIAO1_chr2_96261225_96279173	0/0	t0016	2949	1	0	0	0	0	1	copy fasta	CIAO1	chr2	96261225	96279173
CIAO1_chr2_96261225_96279173	0/0	t0017	2949	1	1	0	0	0	0	copy fasta	CIAO1	chr2	96261225	96279173
CIAO1_chr2_96261225_96279173	0/0	t0018	2950	1	0	0	0	0	1	copy fasta	CIAO1	chr2	96261225	96279173
CIAO1_chr2_96261225_96279173	0/0	t0019	2948	1	0	0	0	1	0	copy fasta	CIAO1	chr2	96261225	96279173
CIAO1_chr2_96261225_96279173	0/0	t0020	2949	1	0	1	0	0	0	copy fasta	CIAO1	chr2	96261225	96279173
CIAO1_chr2_96261225_96279173	0/0	t0021	2949	1	1	0	0	0	0	copy fasta	CIAO1	chr2	96261225	96279173
CIAO1_chr2_96261225_96279173	0/0	t0022	2949	1	0	1	0	0	0	copy fasta	CIAO1	chr2	96261225	96279173
CIAO1_chr2_96261225_96279173	0/0	t0023	2946	1	0	0	1	0	0	copy fasta	CIAO1	chr2	96261225	96279173
CIAO1_chr2_96261225_96279173	0/0	t0024	2949	1	0	0	0	1	0	copy fasta	CIAO1	chr2	96261225	96279173
CIAO2A_chr15_64067565_64098838	0/1	t0001	437	309	81	54	128	14	31	copy fasta	CIAO2A	chr15	64067565	64098838
CIAO2A_chr15_64067565_64098838	0/0	t0002	437	12	10	2	0	0	0	copy fasta	CIAO2A	chr15	64067565	64098838
CIAO2A_chr15_64067565_64098838	0/0	t0003	437	7	6	1	0	0	0	copy fasta	CIAO2A	chr15	64067565	64098838
CIAO2A_chr15_64067565_64098838	0/0	t0004	437	4	0	0	4	0	0	copy fasta	CIAO2A	chr15	64067565	64098838
CIAO2A_chr15_64067565_64098838	0/0	t0005	437	3	0	1	0	0	2	copy fasta	CIAO2A	chr15	64067565	64098838
CIAO2A_chr15_64067565_64098838	0/0	t0006	437	1	1	0	0	0	0	copy fasta	CIAO2A	chr15	64067565	64098838
CIAO2A_chr15_64067565_64098838	0/0	t0007	437	1	0	0	0	0	1	copy fasta	CIAO2A	chr15	64067565	64098838
CIAO2A_chr15_64067565_64098838	1/0	t0008	437	1	0	0	0	0	0	copy fasta	CIAO2A	chr15	64067565	64098838
CIAO2B_chr16_66927065_66939402	1/1	t0001	177	394	97	60	178	13	44	copy fasta	CIAO2B	chr16	66927065	66939402
CIAO2B_chr16_66927065_66939402	0/0	t0002	177	1	1	0	0	0	0	copy fasta	CIAO2B	chr16	66927065	66939402
CIAO2B_chr16_66927065_66939402	0/0	t0003	177	1	0	0	0	1	0	copy fasta	CIAO2B	chr16	66927065	66939402
CIAO3_chr16_724765_745997	0/0	t0001	665	207	21	37	117	2	30	copy fasta	CIAO3	chr16	724765	745997
CIAO3_chr16_724765_745997	1/1	t0002	665	136	37	38	33	10	16	copy fasta	CIAO3	chr16	724765	745997
CIAO3_chr16_724765_745997	0/0	t0003	665	25	23	2	0	0	0	copy fasta	CIAO3	chr16	724765	745997
CIAO3_chr16_724765_745997	0/0	t0004	665	8	7	1	0	0	0	copy fasta	CIAO3	chr16	724765	745997
CIAO3_chr16_724765_745997	0/0	t0005	665	5	5	0	0	0	0	copy fasta	CIAO3	chr16	724765	745997
CIAO3_chr16_724765_745997	0/0	t0006	665	3	0	0	3	0	0	copy fasta	CIAO3	chr16	724765	745997
CIAO3_chr16_724765_745997	0/0	t0007	665	2	2	0	0	0	0	copy fasta	CIAO3	chr16	724765	745997
CIAO3_chr16_724765_745997	0/0	t0008	665	2	0	0	0	1	1	copy fasta	CIAO3	chr16	724765	745997
CIAO3_chr16_724765_745997	0/0	t0009	664	2	1	0	0	0	1	copy fasta	CIAO3	chr16	724765	745997
CIAO3_chr16_724765_745997	0/0	t0010	665	1	1	0	0	0	0	copy fasta	CIAO3	chr16	724765	745997
CIAO3_chr16_724765_745997	0/0	t0011	665	1	1	0	0	0	0	copy fasta	CIAO3	chr16	724765	745997
CIAO3_chr16_724765_745997	0/0	t0012	665	1	1	0	0	0	0	copy fasta	CIAO3	chr16	724765	745997