Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ADCK2_chr7_140667945_140700110	0/0	t0003	673	8	1	5	0	0	2	copy fasta	ADCK2	chr7	140667945	140700110
ADCK2_chr7_140667945_140700110	0/0	t0004	694	3	0	1	1	0	1	copy fasta	ADCK2	chr7	140667945	140700110
ADCK2_chr7_140667945_140700110	0/0	t0005	694	3	3	0	0	0	0	copy fasta	ADCK2	chr7	140667945	140700110
ADCK2_chr7_140667945_140700110	0/0	t0006	694	2	2	0	0	0	0	copy fasta	ADCK2	chr7	140667945	140700110
ADCK2_chr7_140667945_140700110	0/0	t0007	699	2	2	0	0	0	0	copy fasta	ADCK2	chr7	140667945	140700110
ADCK2_chr7_140667945_140700110	0/0	t0008	699	1	0	0	1	0	0	copy fasta	ADCK2	chr7	140667945	140700110
ADCK2_chr7_140667945_140700110	0/0	t0009	704	1	0	1	0	0	0	copy fasta	ADCK2	chr7	140667945	140700110
ADCK2_chr7_140667945_140700110	0/0	t0010	699	1	1	0	0	0	0	copy fasta	ADCK2	chr7	140667945	140700110
ADCK2_chr7_140667945_140700110	0/0	t0011	684	1	0	0	1	0	0	copy fasta	ADCK2	chr7	140667945	140700110
ADCK2_chr7_140667945_140700110	0/0	t0012	694	1	1	0	0	0	0	copy fasta	ADCK2	chr7	140667945	140700110
ADCK5_chr8_144369047_144398242	1/1	t0001	218	196	71	33	62	12	16	copy fasta	ADCK5	chr8	144369047	144398242
ADCK5_chr8_144369047_144398242	0/0	t0002	218	141	17	31	66	4	23	copy fasta	ADCK5	chr8	144369047	144398242
ADCK5_chr8_144369047_144398242	0/0	t0003	218	3	3	0	0	0	0	copy fasta	ADCK5	chr8	144369047	144398242
ADCK5_chr8_144369047_144398242	0/0	t0004	218	2	2	0	0	0	0	copy fasta	ADCK5	chr8	144369047	144398242
ADCK5_chr8_144369047_144398242	0/0	t0005	218	1	0	0	0	0	1	copy fasta	ADCK5	chr8	144369047	144398242
ADCK5_chr8_144369047_144398242	0/0	t0006	218	1	1	0	0	0	0	copy fasta	ADCK5	chr8	144369047	144398242
ADCK5_chr8_144369047_144398242	0/0	t0007	218	1	0	0	1	0	0	copy fasta	ADCK5	chr8	144369047	144398242
ADCK5_chr8_144369047_144398242	0/0	t0008	218	1	0	0	1	0	0	copy fasta	ADCK5	chr8	144369047	144398242
ADCY10_chr1_167804386_167919134	1/1	t0001	510	174	12	30	95	6	29	copy fasta	ADCY10	chr1	167804386	167919134
ADCY10_chr1_167804386_167919134	0/0	t0002	510	111	55	19	27	7	3	copy fasta	ADCY10	chr1	167804386	167919134
ADCY10_chr1_167804386_167919134	0/0	t0003	510	40	19	5	7	1	8	copy fasta	ADCY10	chr1	167804386	167919134
ADCY10_chr1_167804386_167919134	0/0	t0004	510	1	0	0	1	0	0	copy fasta	ADCY10	chr1	167804386	167919134
ADCY1_chr7_45569368_45728116	0/0	t0001	9298	62	3	15	36	1	7	copy fasta	ADCY1	chr7	45569368	45728116
ADCY1_chr7_45569368_45728116	0/0	t0002	9298	40	15	7	15	1	2	copy fasta	ADCY1	chr7	45569368	45728116
ADCY1_chr7_45569368_45728116	0/0	t0003	9297	31	11	7	9	2	2	copy fasta	ADCY1	chr7	45569368	45728116
ADCY1_chr7_45569368_45728116	0/0	t0004	9301	12	1	2	6	0	3	copy fasta	ADCY1	chr7	45569368	45728116
ADCY1_chr7_45569368_45728116	0/0	t0005	9297	11	2	5	4	0	0	copy fasta	ADCY1	chr7	45569368	45728116
ADCY1_chr7_45569368_45728116	0/0	t0006	9290	6	0	1	5	0	0	copy fasta	ADCY1	chr7	45569368	45728116
ADCY1_chr7_45569368_45728116	0/0	t0007	9298	5	0	5	0	0	0	copy fasta	ADCY1	chr7	45569368	45728116
ADCY1_chr7_45569368_45728116	0/0	t0008	9298	5	0	0	1	2	2	copy fasta	ADCY1	chr7	45569368	45728116
ADCY1_chr7_45569368_45728116	0/0	t0009	9297	5	5	0	0	0	0	copy fasta	ADCY1	chr7	45569368	45728116
ADCY1_chr7_45569368_45728116	1/0	t0010	9298	4	3	0	0	0	0	copy fasta	ADCY1	chr7	45569368	45728116
ADCY1_chr7_45569368_45728116	0/0	t0011	9297	4	3	1	0	0	0	copy fasta	ADCY1	chr7	45569368	45728116
ADCY1_chr7_45569368_45728116	0/0	t0012	9298	4	0	0	4	0	0	copy fasta	ADCY1	chr7	45569368	45728116
ADCY1_chr7_45569368_45728116	0/0	t0013	9298	4	0	0	4	0	0	copy fasta	ADCY1	chr7	45569368	45728116
ADCY1_chr7_45569368_45728116	0/0	t0014	9304	3	3	0	0	0	0	copy fasta	ADCY1	chr7	45569368	45728116
ADCY1_chr7_45569368_45728116	0/0	t0015	9287	3	0	0	2	0	1	copy fasta	ADCY1	chr7	45569368	45728116
ADCY1_chr7_45569368_45728116	0/0	t0016	9297	3	3	0	0	0	0	copy fasta	ADCY1	chr7	45569368	45728116
ADCY1_chr7_45569368_45728116	0/1	t0017	9298	3	1	0	0	1	0	copy fasta	ADCY1	chr7	45569368	45728116
ADCY1_chr7_45569368_45728116	0/0	t0018	9300	3	0	0	3	0	0	copy fasta	ADCY1	chr7	45569368	45728116
ADCY1_chr7_45569368_45728116	0/0	t0019	9286	2	0	0	1	0	1	copy fasta	ADCY1	chr7	45569368	45728116
ADCY1_chr7_45569368_45728116	0/0	t0020	9287	2	0	0	2	0	0	copy fasta	ADCY1	chr7	45569368	45728116
ADCY1_chr7_45569368_45728116	0/0	t0021	9287	2	0	0	2	0	0	copy fasta	ADCY1	chr7	45569368	45728116
ADCY1_chr7_45569368_45728116	0/0	t0022	9287	2	0	0	2	0	0	copy fasta	ADCY1	chr7	45569368	45728116
ADCY1_chr7_45569368_45728116	0/0	t0023	9298	2	2	0	0	0	0	copy fasta	ADCY1	chr7	45569368	45728116
ADCY1_chr7_45569368_45728116	0/0	t0024	9301	2	0	0	2	0	0	copy fasta	ADCY1	chr7	45569368	45728116
ADCY1_chr7_45569368_45728116	0/0	t0025	9298	2	0	1	0	0	1	copy fasta	ADCY1	chr7	45569368	45728116
ADCY1_chr7_45569368_45728116	0/0	t0026	9297	2	0	1	1	0	0	copy fasta	ADCY1	chr7	45569368	45728116
ADCY1_chr7_45569368_45728116	0/0	t0027	9298	2	0	2	0	0	0	copy fasta	ADCY1	chr7	45569368	45728116
ADCY1_chr7_45569368_45728116	0/0	t0028	9301	2	0	2	0	0	0	copy fasta	ADCY1	chr7	45569368	45728116