JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CIAO3_chr16_724765_745997	0/0	t0013	665	1	1	0	0	0	0	copy fasta	CIAO3	chr16	724765	745997
CIAO3_chr16_724765_745997	0/0	t0014	665	1	0	0	1	0	0	copy fasta	CIAO3	chr16	724765	745997
CIAO3_chr16_724765_745997	0/0	t0015	665	1	0	0	1	0	0	copy fasta	CIAO3	chr16	724765	745997
CIAO3_chr16_724765_745997	0/0	t0016	664	1	0	0	0	1	0	copy fasta	CIAO3	chr16	724765	745997
CIAO3_chr16_724765_745997	0/0	t0017	665	1	0	0	1	0	0	copy fasta	CIAO3	chr16	724765	745997
CIAPIN1_chr16_57423187_57452385	1/1	t0001	1083	346	80	57	156	9	42	copy fasta	CIAPIN1	chr16	57423187	57452385
CIAPIN1_chr16_57423187_57452385	0/0	t0002	1075	29	0	4	20	1	4	copy fasta	CIAPIN1	chr16	57423187	57452385
CIAPIN1_chr16_57423187_57452385	0/0	t0003	1083	4	3	1	0	0	0	copy fasta	CIAPIN1	chr16	57423187	57452385
CIAPIN1_chr16_57423187_57452385	0/0	t0004	1083	3	1	0	2	0	0	copy fasta	CIAPIN1	chr16	57423187	57452385
CIAPIN1_chr16_57423187_57452385	0/0	t0005	1083	3	3	0	0	0	0	copy fasta	CIAPIN1	chr16	57423187	57452385
CIAPIN1_chr16_57423187_57452385	0/0	t0006	1083	2	2	0	0	0	0	copy fasta	CIAPIN1	chr16	57423187	57452385
CIAPIN1_chr16_57423187_57452385	0/0	t0007	1083	1	0	1	0	0	0	copy fasta	CIAPIN1	chr16	57423187	57452385
CIAPIN1_chr16_57423187_57452385	0/0	t0008	1083	1	0	1	0	0	0	copy fasta	CIAPIN1	chr16	57423187	57452385
CIAPIN1_chr16_57423187_57452385	0/0	t0009	1083	1	1	0	0	0	0	copy fasta	CIAPIN1	chr16	57423187	57452385
CIART_chr1_150277554_150292093	0/0	t0001	854	212	33	34	108	9	28	copy fasta	CIART	chr1	150277554	150292093
CIART_chr1_150277554_150292093	1/0	t0002	854	103	5	16	57	7	17	copy fasta	CIART	chr1	150277554	150292093
CIART_chr1_150277554_150292093	0/1	t0003	854	60	17	18	23	0	1	copy fasta	CIART	chr1	150277554	150292093
CIART_chr1_150277554_150292093	0/0	t0004	854	14	14	0	0	0	0	copy fasta	CIART	chr1	150277554	150292093
CIART_chr1_150277554_150292093	0/0	t0005	854	10	10	0	0	0	0	copy fasta	CIART	chr1	150277554	150292093
CIART_chr1_150277554_150292093	0/0	t0006	854	7	7	0	0	0	0	copy fasta	CIART	chr1	150277554	150292093
CIART_chr1_150277554_150292093	0/0	t0007	854	4	4	0	0	0	0	copy fasta	CIART	chr1	150277554	150292093
CIART_chr1_150277554_150292093	0/0	t0008	854	1	1	0	0	0	0	copy fasta	CIART	chr1	150277554	150292093
CIART_chr1_150277554_150292093	0/0	t0009	853	1	0	0	1	0	0	copy fasta	CIART	chr1	150277554	150292093
CIART_chr1_150277554_150292093	0/0	t0010	854	1	0	1	0	0	0	copy fasta	CIART	chr1	150277554	150292093
CIART_chr1_150277554_150292093	0/0	t0011	854	1	0	1	0	0	0	copy fasta	CIART	chr1	150277554	150292093
CIART_chr1_150277554_150292093	0/0	t0012	854	1	0	0	1	0	0	copy fasta	CIART	chr1	150277554	150292093
CIART_chr1_150277554_150292093	0/0	t0013	854	1	1	0	0	0	0	copy fasta	CIART	chr1	150277554	150292093
CIB1_chr15_90224975_90238941	1/1	t0001	566	437	74	84	222	14	41	copy fasta	CIB1	chr15	90224975	90238941
CIB1_chr15_90224975_90238941	0/0	t0002	566	10	10	0	0	0	0	copy fasta	CIB1	chr15	90224975	90238941
CIB1_chr15_90224975_90238941	0/0	t0003	566	5	4	1	0	0	0	copy fasta	CIB1	chr15	90224975	90238941
CIB1_chr15_90224975_90238941	0/0	t0004	566	3	3	0	0	0	0	copy fasta	CIB1	chr15	90224975	90238941
CIB1_chr15_90224975_90238941	0/0	t0005	566	1	1	0	0	0	0	copy fasta	CIB1	chr15	90224975	90238941
CIB1_chr15_90224975_90238941	0/0	t0006	566	1	0	0	0	0	1	copy fasta	CIB1	chr15	90224975	90238941
CIB1_chr15_90224975_90238941	0/0	t0007	566	1	0	1	0	0	0	copy fasta	CIB1	chr15	90224975	90238941
CIB1_chr15_90224975_90238941	0/0	t0008	566	1	0	0	0	0	1	copy fasta	CIB1	chr15	90224975	90238941
CIB1_chr15_90224975_90238941	0/0	t0009	566	1	0	0	0	0	1	copy fasta	CIB1	chr15	90224975	90238941
CIB2_chr15_78099606_78136445	0/1	t0001	935	224	51	46	88	10	28	copy fasta	CIB2	chr15	78099606	78136445
CIB2_chr15_78099606_78136445	0/0	t0002	935	99	30	21	35	2	11	copy fasta	CIB2	chr15	78099606	78136445
CIB2_chr15_78099606_78136445	0/0	t0003	935	35	1	3	27	2	2	copy fasta	CIB2	chr15	78099606	78136445
CIB2_chr15_78099606_78136445	0/0	t0004	935	8	8	0	0	0	0	copy fasta	CIB2	chr15	78099606	78136445
CIB2_chr15_78099606_78136445	0/0	t0005	936	6	0	0	5	0	1	copy fasta	CIB2	chr15	78099606	78136445
CIB2_chr15_78099606_78136445	0/0	t0006	935	4	0	0	4	0	0	copy fasta	CIB2	chr15	78099606	78136445
CIB2_chr15_78099606_78136445	0/0	t0007	935	4	0	3	0	0	1	copy fasta	CIB2	chr15	78099606	78136445
CIB2_chr15_78099606_78136445	0/0	t0008	936	2	0	0	2	0	0	copy fasta	CIB2	chr15	78099606	78136445
CIB2_chr15_78099606_78136445	0/0	t0009	936	2	0	0	2	0	0	copy fasta	CIB2	chr15	78099606	78136445
CIB2_chr15_78099606_78136445	0/0	t0010	935	1	0	0	0	0	1	copy fasta	CIB2	chr15	78099606	78136445
CIB2_chr15_78099606_78136445	1/0	t0011	936	1	0	0	0	0	0	copy fasta	CIB2	chr15	78099606	78136445
CIB2_chr15_78099606_78136445	0/0	t0012	935	1	0	1	0	0	0	copy fasta	CIB2	chr15	78099606	78136445
CIB2_chr15_78099606_78136445	0/0	t0013	935	1	0	1	0	0	0	copy fasta	CIB2	chr15	78099606	78136445
CIB2_chr15_78099606_78136445	0/0	t0014	935	1	0	1	0	0	0	copy fasta	CIB2	chr15	78099606	78136445