JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CIB2_chr15_78099606_78136445	0/0	t0015	935	1	0	0	1	0	0	copy fasta	CIB2	chr15	78099606	78136445
CIB3_chr19_16156368_16178525	1/1	t0001	148	340	94	57	133	14	40	copy fasta	CIB3	chr19	16156368	16178525
CIB3_chr19_16156368_16178525	0/0	t0002	148	38	0	13	25	0	0	copy fasta	CIB3	chr19	16156368	16178525
CIB4_chr2_26576205_26646366	0/1	t0001	211	208	56	24	97	3	27	copy fasta	CIB4	chr2	26576205	26646366
CIB4_chr2_26576205_26646366	0/0	t0002	211	103	15	37	40	7	4	copy fasta	CIB4	chr2	26576205	26646366
CIB4_chr2_26576205_26646366	1/0	t0003	211	11	10	0	0	0	0	copy fasta	CIB4	chr2	26576205	26646366
CIB4_chr2_26576205_26646366	0/0	t0004	211	10	1	5	2	1	1	copy fasta	CIB4	chr2	26576205	26646366
CIB4_chr2_26576205_26646366	0/0	t0005	211	6	6	0	0	0	0	copy fasta	CIB4	chr2	26576205	26646366
CIB4_chr2_26576205_26646366	0/0	t0006	211	3	1	0	1	1	0	copy fasta	CIB4	chr2	26576205	26646366
CIB4_chr2_26576205_26646366	0/0	t0007	211	2	2	0	0	0	0	copy fasta	CIB4	chr2	26576205	26646366
CIB4_chr2_26576205_26646366	0/0	t0008	211	1	1	0	0	0	0	copy fasta	CIB4	chr2	26576205	26646366
CIBAR1_chr8_93695550_93736527	1/0	t0001	3329	180	34	32	78	8	27	copy fasta	CIBAR1	chr8	93695550	93736527
CIBAR1_chr8_93695550_93736527	0/1	t0002	3331	125	18	27	65	6	8	copy fasta	CIBAR1	chr8	93695550	93736527
CIBAR1_chr8_93695550_93736527	0/0	t0003	3329	14	13	0	0	0	1	copy fasta	CIBAR1	chr8	93695550	93736527
CIBAR1_chr8_93695550_93736527	0/0	t0004	3329	13	13	0	0	0	0	copy fasta	CIBAR1	chr8	93695550	93736527
CIBAR1_chr8_93695550_93736527	0/0	t0005	3329	5	0	4	1	0	0	copy fasta	CIBAR1	chr8	93695550	93736527
CIBAR1_chr8_93695550_93736527	0/0	t0006	3329	5	4	1	0	0	0	copy fasta	CIBAR1	chr8	93695550	93736527
CIBAR1_chr8_93695550_93736527	0/0	t0007	3329	4	3	1	0	0	0	copy fasta	CIBAR1	chr8	93695550	93736527
CIBAR1_chr8_93695550_93736527	0/0	t0008	3329	2	0	0	2	0	0	copy fasta	CIBAR1	chr8	93695550	93736527
CIBAR1_chr8_93695550_93736527	0/0	t0009	3329	2	0	0	0	0	2	copy fasta	CIBAR1	chr8	93695550	93736527
CIBAR1_chr8_93695550_93736527	0/0	t0010	3329	2	0	2	0	0	0	copy fasta	CIBAR1	chr8	93695550	93736527
CIBAR1_chr8_93695550_93736527	0/0	t0011	3329	2	2	0	0	0	0	copy fasta	CIBAR1	chr8	93695550	93736527
CIBAR1_chr8_93695550_93736527	0/0	t0012	3329	1	0	0	1	0	0	copy fasta	CIBAR1	chr8	93695550	93736527
CIBAR1_chr8_93695550_93736527	0/0	t0013	3329	1	0	0	1	0	0	copy fasta	CIBAR1	chr8	93695550	93736527
CIBAR1_chr8_93695550_93736527	0/0	t0014	3331	1	1	0	0	0	0	copy fasta	CIBAR1	chr8	93695550	93736527
CIBAR1_chr8_93695550_93736527	0/0	t0015	3331	1	1	0	0	0	0	copy fasta	CIBAR1	chr8	93695550	93736527
CIBAR1_chr8_93695550_93736527	0/0	t0016	3331	1	1	0	0	0	0	copy fasta	CIBAR1	chr8	93695550	93736527
CIBAR1_chr8_93695550_93736527	0/0	t0017	3331	1	0	1	0	0	0	copy fasta	CIBAR1	chr8	93695550	93736527
CIBAR1_chr8_93695550_93736527	0/0	t0018	3331	1	0	1	0	0	0	copy fasta	CIBAR1	chr8	93695550	93736527
CIBAR1_chr8_93695550_93736527	0/0	t0019	3329	1	0	1	0	0	0	copy fasta	CIBAR1	chr8	93695550	93736527
CIBAR1_chr8_93695550_93736527	0/0	t0020	3329	1	0	1	0	0	0	copy fasta	CIBAR1	chr8	93695550	93736527
CIBAR1_chr8_93695550_93736527	0/0	t0021	3329	1	0	0	1	0	0	copy fasta	CIBAR1	chr8	93695550	93736527
CIBAR1_chr8_93695550_93736527	0/0	t0022	3329	1	1	0	0	0	0	copy fasta	CIBAR1	chr8	93695550	93736527
CIBAR1_chr8_93695550_93736527	0/0	t0023	3329	1	0	1	0	0	0	copy fasta	CIBAR1	chr8	93695550	93736527
CIBAR1_chr8_93695550_93736527	0/0	t0024	3329	1	1	0	0	0	0	copy fasta	CIBAR1	chr8	93695550	93736527
CIBAR1_chr8_93695550_93736527	0/0	t0025	3329	1	1	0	0	0	0	copy fasta	CIBAR1	chr8	93695550	93736527
CIBAR1_chr8_93695550_93736527	0/0	t0026	3329	1	1	0	0	0	0	copy fasta	CIBAR1	chr8	93695550	93736527
CIBAR1_chr8_93695550_93736527	0/0	t0027	3331	1	0	0	1	0	0	copy fasta	CIBAR1	chr8	93695550	93736527
CIBAR1_chr8_93695550_93736527	0/0	t0028	3329	1	1	0	0	0	0	copy fasta	CIBAR1	chr8	93695550	93736527
CIBAR1_chr8_93695550_93736527	0/0	t0029	3329	1	1	0	0	0	0	copy fasta	CIBAR1	chr8	93695550	93736527
CIBAR1_chr8_93695550_93736527	0/0	t0030	3329	1	0	0	1	0	0	copy fasta	CIBAR1	chr8	93695550	93736527
CIBAR1_chr8_93695550_93736527	0/0	t0031	3331	1	0	0	1	0	0	copy fasta	CIBAR1	chr8	93695550	93736527
CIBAR2_chr16_85093358_85117472	1/0	t0001	948	254	24	40	161	6	22	copy fasta	CIBAR2	chr16	85093358	85117472
CIBAR2_chr16_85093358_85117472	0/0	t0002	948	60	11	15	14	4	16	copy fasta	CIBAR2	chr16	85093358	85117472
CIBAR2_chr16_85093358_85117472	0/0	t0003	948	28	18	4	0	2	4	copy fasta	CIBAR2	chr16	85093358	85117472
CIBAR2_chr16_85093358_85117472	0/0	t0004	948	21	4	2	11	0	4	copy fasta	CIBAR2	chr16	85093358	85117472
CIBAR2_chr16_85093358_85117472	0/0	t0005	948	19	7	4	8	0	0	copy fasta	CIBAR2	chr16	85093358	85117472
CIBAR2_chr16_85093358_85117472	0/0	t0006	948	8	3	4	0	1	0	copy fasta	CIBAR2	chr16	85093358	85117472
CIBAR2_chr16_85093358_85117472	0/0	t0007	948	8	3	2	1	0	2	copy fasta	CIBAR2	chr16	85093358	85117472
CIBAR2_chr16_85093358_85117472	0/1	t0008	948	7	2	3	0	0	1	copy fasta	CIBAR2	chr16	85093358	85117472