JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CIBAR2_chr16_85093358_85117472	0/0	t0009	948	5	4	0	0	0	1	copy fasta	CIBAR2	chr16	85093358	85117472
CIBAR2_chr16_85093358_85117472	0/0	t0010	948	4	0	3	0	1	0	copy fasta	CIBAR2	chr16	85093358	85117472
CIBAR2_chr16_85093358_85117472	0/0	t0011	948	4	3	1	0	0	0	copy fasta	CIBAR2	chr16	85093358	85117472
CIBAR2_chr16_85093358_85117472	0/0	t0012	948	3	1	1	1	0	0	copy fasta	CIBAR2	chr16	85093358	85117472
CIBAR2_chr16_85093358_85117472	0/0	t0013	948	2	0	0	2	0	0	copy fasta	CIBAR2	chr16	85093358	85117472
CIBAR2_chr16_85093358_85117472	0/0	t0014	948	2	2	0	0	0	0	copy fasta	CIBAR2	chr16	85093358	85117472
CIBAR2_chr16_85093358_85117472	0/0	t0015	948	1	1	0	0	0	0	copy fasta	CIBAR2	chr16	85093358	85117472
CIBAR2_chr16_85093358_85117472	0/0	t0016	948	1	0	0	1	0	0	copy fasta	CIBAR2	chr16	85093358	85117472
CIBAR2_chr16_85093358_85117472	0/0	t0017	948	1	0	1	0	0	0	copy fasta	CIBAR2	chr16	85093358	85117472
CIBAR2_chr16_85093358_85117472	0/0	t0018	948	1	1	0	0	0	0	copy fasta	CIBAR2	chr16	85093358	85117472
CIBAR2_chr16_85093358_85117472	0/0	t0019	975	1	0	0	1	0	0	copy fasta	CIBAR2	chr16	85093358	85117472
CIBAR2_chr16_85093358_85117472	0/0	t0020	948	1	1	0	0	0	0	copy fasta	CIBAR2	chr16	85093358	85117472
CIBAR2_chr16_85093358_85117472	0/0	t0021	948	1	1	0	0	0	0	copy fasta	CIBAR2	chr16	85093358	85117472
CIBAR2_chr16_85093358_85117472	0/0	t0022	948	1	1	0	0	0	0	copy fasta	CIBAR2	chr16	85093358	85117472
CIBAR2_chr16_85093358_85117472	0/0	t0023	948	1	1	0	0	0	0	copy fasta	CIBAR2	chr16	85093358	85117472
CIBAR2_chr16_85093358_85117472	0/0	t0024	948	1	1	0	0	0	0	copy fasta	CIBAR2	chr16	85093358	85117472
CIBAR2_chr16_85093358_85117472	0/0	t0025	948	1	1	0	0	0	0	copy fasta	CIBAR2	chr16	85093358	85117472
CIC_chr19_42264252_42300796	1/1	t0001	746	174	55	48	37	6	26	copy fasta	CIC	chr19	42264252	42300796
CIC_chr19_42264252_42300796	0/0	t0002	747	13	3	5	3	0	2	copy fasta	CIC	chr19	42264252	42300796
CIC_chr19_42264252_42300796	0/0	t0003	746	4	0	0	4	0	0	copy fasta	CIC	chr19	42264252	42300796
CIC_chr19_42264252_42300796	0/0	t0004	746	2	1	1	0	0	0	copy fasta	CIC	chr19	42264252	42300796
CIC_chr19_42264252_42300796	0/0	t0005	746	1	0	0	0	0	1	copy fasta	CIC	chr19	42264252	42300796
CIC_chr19_42264252_42300796	0/0	t0006	771	1	1	0	0	0	0	copy fasta	CIC	chr19	42264252	42300796
CIC_chr19_42264252_42300796	0/0	t0007	747	1	0	0	0	0	1	copy fasta	CIC	chr19	42264252	42300796
CIDEA_chr18_12249361_12282595	1/1	t0001	349	399	79	72	190	13	43	copy fasta	CIDEA	chr18	12249361	12282595
CIDEA_chr18_12249361_12282595	0/0	t0002	349	12	5	3	0	3	1	copy fasta	CIDEA	chr18	12249361	12282595
CIDEA_chr18_12249361_12282595	0/0	t0003	349	11	0	11	0	0	0	copy fasta	CIDEA	chr18	12249361	12282595
CIDEA_chr18_12249361_12282595	0/0	t0004	349	8	0	0	8	0	0	copy fasta	CIDEA	chr18	12249361	12282595
CIDEA_chr18_12249361_12282595	0/0	t0005	349	8	8	0	0	0	0	copy fasta	CIDEA	chr18	12249361	12282595
CIDEA_chr18_12249361_12282595	0/0	t0006	350	6	6	0	0	0	0	copy fasta	CIDEA	chr18	12249361	12282595
CIDEA_chr18_12249361_12282595	0/0	t0007	350	2	2	0	0	0	0	copy fasta	CIDEA	chr18	12249361	12282595
CIDEA_chr18_12249361_12282595	0/0	t0008	349	1	0	0	1	0	0	copy fasta	CIDEA	chr18	12249361	12282595
CIDEA_chr18_12249361_12282595	0/0	t0009	349	1	0	0	1	0	0	copy fasta	CIDEA	chr18	12249361	12282595
CIDEB_chr14_24300187_24312977	0/1	t0001	566	354	72	63	155	16	47	copy fasta	CIDEB	chr14	24300187	24312977
CIDEB_chr14_24300187_24312977	1/0	t0002	566	53	14	3	35	0	0	copy fasta	CIDEB	chr14	24300187	24312977
CIDEB_chr14_24300187_24312977	0/0	t0003	566	3	3	0	0	0	0	copy fasta	CIDEB	chr14	24300187	24312977
CIDEB_chr14_24300187_24312977	0/0	t0004	566	1	1	0	0	0	0	copy fasta	CIDEB	chr14	24300187	24312977
CIDEB_chr14_24300187_24312977	0/0	t0005	566	1	0	0	1	0	0	copy fasta	CIDEB	chr14	24300187	24312977
CIDEB_chr14_24300187_24312977	0/0	t0006	566	1	0	0	1	0	0	copy fasta	CIDEB	chr14	24300187	24312977
CIDEB_chr14_24300187_24312977	0/0	t0007	566	1	0	0	0	0	1	copy fasta	CIDEB	chr14	24300187	24312977
CIDEC_chr3_9861714_9885253	0/1	t0001	589	176	69	41	26	12	27	copy fasta	CIDEC	chr3	9861714	9885253
CIDEC_chr3_9861714_9885253	1/0	t0002	589	114	22	25	53	3	10	copy fasta	CIDEC	chr3	9861714	9885253
CIDEC_chr3_9861714_9885253	0/0	t0003	589	103	0	7	84	2	10	copy fasta	CIDEC	chr3	9861714	9885253
CIDEC_chr3_9861714_9885253	0/0	t0004	589	5	0	4	0	1	0	copy fasta	CIDEC	chr3	9861714	9885253
CIDEC_chr3_9861714_9885253	0/0	t0005	559	2	0	0	2	0	0	copy fasta	CIDEC	chr3	9861714	9885253
CIDEC_chr3_9861714_9885253	0/0	t0006	589	2	0	0	2	0	0	copy fasta	CIDEC	chr3	9861714	9885253
CIDEC_chr3_9861714_9885253	0/0	t0007	589	2	2	0	0	0	0	copy fasta	CIDEC	chr3	9861714	9885253
CIDEC_chr3_9861714_9885253	0/0	t0008	589	1	0	0	1	0	0	copy fasta	CIDEC	chr3	9861714	9885253
CIDEC_chr3_9861714_9885253	0/0	t0009	589	1	0	0	0	0	1	copy fasta	CIDEC	chr3	9861714	9885253
CIDEC_chr3_9861714_9885253	0/0	t0010	589	1	1	0	0	0	0	copy fasta	CIDEC	chr3	9861714	9885253