JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CIITA_chr16_10872202_10941394	0/0	t0048	12672	1	0	0	1	0	0	copy fasta	CIITA	chr16	10872202	10941394
CIITA_chr16_10872202_10941394	0/0	t0049	12672	1	0	0	1	0	0	copy fasta	CIITA	chr16	10872202	10941394
CIITA_chr16_10872202_10941394	0/0	t0050	12670	1	1	0	0	0	0	copy fasta	CIITA	chr16	10872202	10941394
CIITA_chr16_10872202_10941394	0/0	t0051	12670	1	0	1	0	0	0	copy fasta	CIITA	chr16	10872202	10941394
CIITA_chr16_10872202_10941394	0/0	t0052	12669	1	0	1	0	0	0	copy fasta	CIITA	chr16	10872202	10941394
CIITA_chr16_10872202_10941394	0/0	t0053	12669	1	1	0	0	0	0	copy fasta	CIITA	chr16	10872202	10941394
CIITA_chr16_10872202_10941394	0/0	t0054	12670	1	1	0	0	0	0	copy fasta	CIITA	chr16	10872202	10941394
CIITA_chr16_10872202_10941394	0/0	t0055	12670	1	0	1	0	0	0	copy fasta	CIITA	chr16	10872202	10941394
CIITA_chr16_10872202_10941394	0/0	t0056	12671	1	0	0	1	0	0	copy fasta	CIITA	chr16	10872202	10941394
CIITA_chr16_10872202_10941394	0/0	t0057	12672	1	0	0	0	0	1	copy fasta	CIITA	chr16	10872202	10941394
CIITA_chr16_10872202_10941394	0/0	t0058	12671	1	0	0	1	0	0	copy fasta	CIITA	chr16	10872202	10941394
CIITA_chr16_10872202_10941394	0/0	t0059	12671	1	1	0	0	0	0	copy fasta	CIITA	chr16	10872202	10941394
CIITA_chr16_10872202_10941394	0/0	t0060	12672	1	0	0	1	0	0	copy fasta	CIITA	chr16	10872202	10941394
CIITA_chr16_10872202_10941394	0/0	t0061	12671	1	0	1	0	0	0	copy fasta	CIITA	chr16	10872202	10941394
CIITA_chr16_10872202_10941394	0/0	t0062	12669	1	1	0	0	0	0	copy fasta	CIITA	chr16	10872202	10941394
CIITA_chr16_10872202_10941394	0/0	t0063	12671	1	1	0	0	0	0	copy fasta	CIITA	chr16	10872202	10941394
CIITA_chr16_10872202_10941394	0/0	t0064	12670	1	0	0	0	0	1	copy fasta	CIITA	chr16	10872202	10941394
CIITA_chr16_10872202_10941394	0/0	t0065	12671	1	1	0	0	0	0	copy fasta	CIITA	chr16	10872202	10941394
CIITA_chr16_10872202_10941394	0/0	t0066	12668	1	0	0	0	0	1	copy fasta	CIITA	chr16	10872202	10941394
CIITA_chr16_10872202_10941394	0/0	t0067	12670	1	0	0	1	0	0	copy fasta	CIITA	chr16	10872202	10941394
CIITA_chr16_10872202_10941394	0/0	t0068	12670	1	0	0	1	0	0	copy fasta	CIITA	chr16	10872202	10941394
CIITA_chr16_10872202_10941394	0/0	t0069	12671	1	0	1	0	0	0	copy fasta	CIITA	chr16	10872202	10941394
CIITA_chr16_10872202_10941394	0/0	t0070	12670	1	0	0	1	0	0	copy fasta	CIITA	chr16	10872202	10941394
CIITA_chr16_10872202_10941394	0/0	t0071	12670	1	0	0	1	0	0	copy fasta	CIITA	chr16	10872202	10941394
CIITA_chr16_10872202_10941394	0/0	t0072	12672	1	0	0	1	0	0	copy fasta	CIITA	chr16	10872202	10941394
CIITA_chr16_10872202_10941394	0/0	t0073	12673	1	0	0	1	0	0	copy fasta	CIITA	chr16	10872202	10941394
CIITA_chr16_10872202_10941394	0/0	t0074	12670	1	1	0	0	0	0	copy fasta	CIITA	chr16	10872202	10941394
CIITA_chr16_10872202_10941394	0/0	t0075	12671	1	0	1	0	0	0	copy fasta	CIITA	chr16	10872202	10941394
CIITA_chr16_10872202_10941394	0/0	t0076	12671	1	0	1	0	0	0	copy fasta	CIITA	chr16	10872202	10941394
CIITA_chr16_10872202_10941394	0/0	t0077	12672	1	0	0	1	0	0	copy fasta	CIITA	chr16	10872202	10941394
CIITA_chr16_10872202_10941394	0/0	t0078	12672	1	0	0	1	0	0	copy fasta	CIITA	chr16	10872202	10941394
CIITA_chr16_10872202_10941394	0/0	t0079	12671	1	0	0	1	0	0	copy fasta	CIITA	chr16	10872202	10941394
CIITA_chr16_10872202_10941394	0/0	t0080	12671	1	1	0	0	0	0	copy fasta	CIITA	chr16	10872202	10941394
CIITA_chr16_10872202_10941394	0/0	t0081	12669	1	1	0	0	0	0	copy fasta	CIITA	chr16	10872202	10941394
CIITA_chr16_10872202_10941394	0/0	t0082	12671	1	0	0	0	0	1	copy fasta	CIITA	chr16	10872202	10941394
CIITA_chr16_10872202_10941394	0/0	t0083	12671	1	1	0	0	0	0	copy fasta	CIITA	chr16	10872202	10941394
CIITA_chr16_10872202_10941394	0/0	t0084	12673	1	0	0	1	0	0	copy fasta	CIITA	chr16	10872202	10941394
CIITA_chr16_10872202_10941394	0/0	t0085	12671	1	0	0	1	0	0	copy fasta	CIITA	chr16	10872202	10941394
CIITA_chr16_10872202_10941394	0/0	t0086	12673	1	0	0	1	0	0	copy fasta	CIITA	chr16	10872202	10941394
CIITA_chr16_10872202_10941394	0/0	t0087	12671	1	0	0	0	0	1	copy fasta	CIITA	chr16	10872202	10941394
CIITA_chr16_10872202_10941394	0/0	t0088	12671	1	0	0	1	0	0	copy fasta	CIITA	chr16	10872202	10941394
CIITA_chr16_10872202_10941394	0/0	t0089	12671	1	0	0	1	0	0	copy fasta	CIITA	chr16	10872202	10941394
CIITA_chr16_10872202_10941394	0/0	t0090	12671	1	0	0	1	0	0	copy fasta	CIITA	chr16	10872202	10941394
CIITA_chr16_10872202_10941394	0/0	t0091	12670	1	0	0	1	0	0	copy fasta	CIITA	chr16	10872202	10941394
CIITA_chr16_10872202_10941394	0/0	t0092	12671	1	0	0	0	1	0	copy fasta	CIITA	chr16	10872202	10941394
CIITA_chr16_10872202_10941394	0/0	t0093	12672	1	0	0	1	0	0	copy fasta	CIITA	chr16	10872202	10941394
CIITA_chr16_10872202_10941394	0/0	t0094	12672	1	0	0	0	0	1	copy fasta	CIITA	chr16	10872202	10941394
CIITA_chr16_10872202_10941394	0/0	t0095	12669	1	1	0	0	0	0	copy fasta	CIITA	chr16	10872202	10941394
CIITA_chr16_10872202_10941394	0/0	t0096	12671	1	0	0	0	1	0	copy fasta	CIITA	chr16	10872202	10941394
CIITA_chr16_10872202_10941394	0/0	t0097	12671	1	0	0	1	0	0	copy fasta	CIITA	chr16	10872202	10941394