JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CIITA_chr16_10872202_10941394	0/0	t0098	12671	1	0	0	1	0	0	copy fasta	CIITA	chr16	10872202	10941394
CIITA_chr16_10872202_10941394	0/0	t0099	12672	1	1	0	0	0	0	copy fasta	CIITA	chr16	10872202	10941394
CIITA_chr16_10872202_10941394	0/0	t0100	12672	1	1	0	0	0	0	copy fasta	CIITA	chr16	10872202	10941394
CIITA_chr16_10872202_10941394	0/0	t0101	12672	1	1	0	0	0	0	copy fasta	CIITA	chr16	10872202	10941394
CIITA_chr16_10872202_10941394	0/0	t0102	12671	1	1	0	0	0	0	copy fasta	CIITA	chr16	10872202	10941394
CIITA_chr16_10872202_10941394	0/0	t0103	12671	1	1	0	0	0	0	copy fasta	CIITA	chr16	10872202	10941394
CIITA_chr16_10872202_10941394	0/0	t0104	12669	1	1	0	0	0	0	copy fasta	CIITA	chr16	10872202	10941394
CIITA_chr16_10872202_10941394	0/0	t0105	12669	1	1	0	0	0	0	copy fasta	CIITA	chr16	10872202	10941394
CIITA_chr16_10872202_10941394	0/0	t0106	12671	1	1	0	0	0	0	copy fasta	CIITA	chr16	10872202	10941394
CIITA_chr16_10872202_10941394	0/0	t0107	12671	1	1	0	0	0	0	copy fasta	CIITA	chr16	10872202	10941394
CIITA_chr16_10872202_10941394	0/0	t0108	12672	1	1	0	0	0	0	copy fasta	CIITA	chr16	10872202	10941394
CIITA_chr16_10872202_10941394	0/0	t0109	12669	1	1	0	0	0	0	copy fasta	CIITA	chr16	10872202	10941394
CIITA_chr16_10872202_10941394	0/0	t0110	12669	1	1	0	0	0	0	copy fasta	CIITA	chr16	10872202	10941394
CIITA_chr16_10872202_10941394	0/0	t0111	12673	1	0	0	1	0	0	copy fasta	CIITA	chr16	10872202	10941394
CIITA_chr16_10872202_10941394	0/0	t0112	12670	1	1	0	0	0	0	copy fasta	CIITA	chr16	10872202	10941394
CIITA_chr16_10872202_10941394	0/0	t0113	12672	1	1	0	0	0	0	copy fasta	CIITA	chr16	10872202	10941394
CIITA_chr16_10872202_10941394	0/0	t0114	12672	1	0	0	1	0	0	copy fasta	CIITA	chr16	10872202	10941394
CIITA_chr16_10872202_10941394	0/0	t0115	12669	1	1	0	0	0	0	copy fasta	CIITA	chr16	10872202	10941394
CIITA_chr16_10872202_10941394	0/0	t0116	12672	1	1	0	0	0	0	copy fasta	CIITA	chr16	10872202	10941394
CIITA_chr16_10872202_10941394	0/0	t0117	12669	1	0	1	0	0	0	copy fasta	CIITA	chr16	10872202	10941394
CIITA_chr16_10872202_10941394	0/0	t0118	12669	1	1	0	0	0	0	copy fasta	CIITA	chr16	10872202	10941394
CIITA_chr16_10872202_10941394	0/0	t0119	12670	1	0	0	0	0	1	copy fasta	CIITA	chr16	10872202	10941394
CIITA_chr16_10872202_10941394	0/0	t0120	12669	1	0	0	0	0	1	copy fasta	CIITA	chr16	10872202	10941394
CIITA_chr16_10872202_10941394	0/0	t0121	12671	1	1	0	0	0	0	copy fasta	CIITA	chr16	10872202	10941394
CIITA_chr16_10872202_10941394	0/0	t0122	12669	1	0	1	0	0	0	copy fasta	CIITA	chr16	10872202	10941394
CIITA_chr16_10872202_10941394	0/0	t0123	12669	1	0	0	1	0	0	copy fasta	CIITA	chr16	10872202	10941394
CIITA_chr16_10872202_10941394	0/0	t0124	12671	1	0	0	1	0	0	copy fasta	CIITA	chr16	10872202	10941394
CIITA_chr16_10872202_10941394	0/0	t0125	12670	1	0	0	1	0	0	copy fasta	CIITA	chr16	10872202	10941394
CIITA_chr16_10872202_10941394	0/0	t0126	12672	1	0	0	1	0	0	copy fasta	CIITA	chr16	10872202	10941394
CIITA_chr16_10872202_10941394	0/0	t0127	12672	1	1	0	0	0	0	copy fasta	CIITA	chr16	10872202	10941394
CIITA_chr16_10872202_10941394	0/0	t0128	12672	1	1	0	0	0	0	copy fasta	CIITA	chr16	10872202	10941394
CIITA_chr16_10872202_10941394	0/0	t0129	12671	1	0	0	1	0	0	copy fasta	CIITA	chr16	10872202	10941394
CIITA_chr16_10872202_10941394	0/1	t0130	12671	1	0	0	0	0	0	copy fasta	CIITA	chr16	10872202	10941394
CIITA_chr16_10872202_10941394	0/0	t0131	12670	1	1	0	0	0	0	copy fasta	CIITA	chr16	10872202	10941394
CIITA_chr16_10872202_10941394	0/0	t0132	12671	1	1	0	0	0	0	copy fasta	CIITA	chr16	10872202	10941394
CIITA_chr16_10872202_10941394	0/0	t0133	12671	1	0	1	0	0	0	copy fasta	CIITA	chr16	10872202	10941394
CIITA_chr16_10872202_10941394	0/0	t0134	12660	1	0	1	0	0	0	copy fasta	CIITA	chr16	10872202	10941394
CILK1_chr6_52996303_53066824	1/1	t0001	4248	206	56	38	86	7	17	copy fasta	CILK1	chr6	52996303	53066824
CILK1_chr6_52996303_53066824	0/0	t0002	4243	11	0	0	11	0	0	copy fasta	CILK1	chr6	52996303	53066824
CILK1_chr6_52996303_53066824	0/0	t0003	4246	5	3	2	0	0	0	copy fasta	CILK1	chr6	52996303	53066824
CILK1_chr6_52996303_53066824	0/0	t0004	4253	3	3	0	0	0	0	copy fasta	CILK1	chr6	52996303	53066824
CILK1_chr6_52996303_53066824	0/0	t0005	4248	2	2	0	0	0	0	copy fasta	CILK1	chr6	52996303	53066824
CILK1_chr6_52996303_53066824	0/0	t0006	4248	1	0	0	1	0	0	copy fasta	CILK1	chr6	52996303	53066824
CILK1_chr6_52996303_53066824	0/0	t0007	4248	1	1	0	0	0	0	copy fasta	CILK1	chr6	52996303	53066824
CILK1_chr6_52996303_53066824	0/0	t0008	4248	1	1	0	0	0	0	copy fasta	CILK1	chr6	52996303	53066824
CILK1_chr6_52996303_53066824	0/0	t0009	4248	1	0	0	0	0	1	copy fasta	CILK1	chr6	52996303	53066824
CILK1_chr6_52996303_53066824	0/0	t0010	4248	1	0	0	0	1	0	copy fasta	CILK1	chr6	52996303	53066824
CILK1_chr6_52996303_53066824	0/0	t0011	4248	1	1	0	0	0	0	copy fasta	CILK1	chr6	52996303	53066824
CILK1_chr6_52996303_53066824	0/0	t0012	4248	1	0	0	1	0	0	copy fasta	CILK1	chr6	52996303	53066824
CILK1_chr6_52996303_53066824	0/0	t0013	4246	1	1	0	0	0	0	copy fasta	CILK1	chr6	52996303	53066824