JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CILK1_chr6_52996303_53066824	0/0	t0014	4248	1	0	0	1	0	0	copy fasta	CILK1	chr6	52996303	53066824
CILK1_chr6_52996303_53066824	0/0	t0015	4248	1	0	0	1	0	0	copy fasta	CILK1	chr6	52996303	53066824
CILK1_chr6_52996303_53066824	0/0	t0016	4248	1	1	0	0	0	0	copy fasta	CILK1	chr6	52996303	53066824
CILK1_chr6_52996303_53066824	0/0	t0017	4253	1	1	0	0	0	0	copy fasta	CILK1	chr6	52996303	53066824
CILK1_chr6_52996303_53066824	0/0	t0018	4248	1	1	0	0	0	0	copy fasta	CILK1	chr6	52996303	53066824
CILK1_chr6_52996303_53066824	0/0	t0019	4248	1	1	0	0	0	0	copy fasta	CILK1	chr6	52996303	53066824
CILK1_chr6_52996303_53066824	0/0	t0020	4246	1	1	0	0	0	0	copy fasta	CILK1	chr6	52996303	53066824
CILK1_chr6_52996303_53066824	0/0	t0021	4248	1	1	0	0	0	0	copy fasta	CILK1	chr6	52996303	53066824
CILK1_chr6_52996303_53066824	0/0	t0022	4243	1	0	0	1	0	0	copy fasta	CILK1	chr6	52996303	53066824
CILP2_chr19_19533265_19551659	1/1	t0001	729	264	53	50	114	15	30	copy fasta	CILP2	chr19	19533265	19551659
CILP2_chr19_19533265_19551659	0/0	t0002	729	49	29	4	9	0	7	copy fasta	CILP2	chr19	19533265	19551659
CILP2_chr19_19533265_19551659	0/0	t0003	729	28	6	9	0	3	10	copy fasta	CILP2	chr19	19533265	19551659
CILP2_chr19_19533265_19551659	0/0	t0004	729	6	6	0	0	0	0	copy fasta	CILP2	chr19	19533265	19551659
CILP2_chr19_19533265_19551659	0/0	t0005	729	1	0	0	1	0	0	copy fasta	CILP2	chr19	19533265	19551659
CILP2_chr19_19533265_19551659	0/0	t0006	729	1	0	0	1	0	0	copy fasta	CILP2	chr19	19533265	19551659
CILP2_chr19_19533265_19551659	0/0	t0007	729	1	0	1	0	0	0	copy fasta	CILP2	chr19	19533265	19551659
CILP2_chr19_19533265_19551659	0/0	t0008	729	1	0	0	0	0	1	copy fasta	CILP2	chr19	19533265	19551659
CILP2_chr19_19533265_19551659	0/0	t0009	729	1	0	0	1	0	0	copy fasta	CILP2	chr19	19533265	19551659
CILP_chr15_65189760_65216473	0/1	t0001	2124	280	62	60	107	14	36	copy fasta	CILP	chr15	65189760	65216473
CILP_chr15_65189760_65216473	0/0	t0002	2125	18	4	10	3	0	1	copy fasta	CILP	chr15	65189760	65216473
CILP_chr15_65189760_65216473	1/0	t0003	2124	7	6	0	0	0	0	copy fasta	CILP	chr15	65189760	65216473
CILP_chr15_65189760_65216473	0/0	t0004	2124	5	5	0	0	0	0	copy fasta	CILP	chr15	65189760	65216473
CILP_chr15_65189760_65216473	0/0	t0005	2125	3	3	0	0	0	0	copy fasta	CILP	chr15	65189760	65216473
CILP_chr15_65189760_65216473	0/0	t0006	2124	3	3	0	0	0	0	copy fasta	CILP	chr15	65189760	65216473
CILP_chr15_65189760_65216473	0/0	t0007	2124	2	0	0	2	0	0	copy fasta	CILP	chr15	65189760	65216473
CILP_chr15_65189760_65216473	0/0	t0008	2124	2	0	2	0	0	0	copy fasta	CILP	chr15	65189760	65216473
CILP_chr15_65189760_65216473	0/0	t0009	2124	2	2	0	0	0	0	copy fasta	CILP	chr15	65189760	65216473
CILP_chr15_65189760_65216473	0/0	t0010	2124	1	1	0	0	0	0	copy fasta	CILP	chr15	65189760	65216473
CILP_chr15_65189760_65216473	0/0	t0011	2124	1	0	0	1	0	0	copy fasta	CILP	chr15	65189760	65216473
CILP_chr15_65189760_65216473	0/0	t0012	2124	1	0	0	0	0	1	copy fasta	CILP	chr15	65189760	65216473
CILP_chr15_65189760_65216473	0/0	t0013	2125	1	1	0	0	0	0	copy fasta	CILP	chr15	65189760	65216473
CILP_chr15_65189760_65216473	0/0	t0014	2124	1	0	0	1	0	0	copy fasta	CILP	chr15	65189760	65216473
CILP_chr15_65189760_65216473	0/0	t0015	2124	1	0	0	1	0	0	copy fasta	CILP	chr15	65189760	65216473
CILP_chr15_65189760_65216473	0/0	t0016	2124	1	0	0	1	0	0	copy fasta	CILP	chr15	65189760	65216473
CILP_chr15_65189760_65216473	0/0	t0017	2124	1	0	0	1	0	0	copy fasta	CILP	chr15	65189760	65216473
CILP_chr15_65189760_65216473	0/0	t0018	2124	1	1	0	0	0	0	copy fasta	CILP	chr15	65189760	65216473
CILP_chr15_65189760_65216473	0/0	t0019	2124	1	0	0	1	0	0	copy fasta	CILP	chr15	65189760	65216473
CINP_chr14_102343282_102367890	0/0	t0001	318	265	54	46	126	13	26	copy fasta	CINP	chr14	102343282	102367890
CINP_chr14_102343282_102367890	0/1	t0002	315	97	30	28	20	5	13	copy fasta	CINP	chr14	102343282	102367890
CINP_chr14_102343282_102367890	1/0	t0003	315	47	0	5	40	0	1	copy fasta	CINP	chr14	102343282	102367890
CINP_chr14_102343282_102367890	0/0	t0004	318	3	3	0	0	0	0	copy fasta	CINP	chr14	102343282	102367890
CINP_chr14_102343282_102367890	0/0	t0005	318	2	1	1	0	0	0	copy fasta	CINP	chr14	102343282	102367890
CINP_chr14_102343282_102367890	0/0	t0006	315	2	0	2	0	0	0	copy fasta	CINP	chr14	102343282	102367890
CINP_chr14_102343282_102367890	0/0	t0007	315	1	0	0	1	0	0	copy fasta	CINP	chr14	102343282	102367890
CINP_chr14_102343282_102367890	0/0	t0008	318	1	1	0	0	0	0	copy fasta	CINP	chr14	102343282	102367890
CINP_chr14_102343282_102367890	0/0	t0009	318	1	1	0	0	0	0	copy fasta	CINP	chr14	102343282	102367890
CINP_chr14_102343282_102367890	0/0	t0010	315	1	0	0	1	0	0	copy fasta	CINP	chr14	102343282	102367890
CIP2A_chr3_108544864_108594438	1/1	t0001	1349	165	28	46	65	9	15	copy fasta	CIP2A	chr3	108544864	108594438
CIP2A_chr3_108544864_108594438	0/0	t0002	1349	111	16	16	64	2	13	copy fasta	CIP2A	chr3	108544864	108594438
CIP2A_chr3_108544864_108594438	0/0	t0003	1349	32	29	3	0	0	0	copy fasta	CIP2A	chr3	108544864	108594438