JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CIP2A_chr3_108544864_108594438	0/0	t0004	1349	30	2	8	4	1	15	copy fasta	CIP2A	chr3	108544864	108594438
CIP2A_chr3_108544864_108594438	0/0	t0005	1349	15	12	2	0	0	1	copy fasta	CIP2A	chr3	108544864	108594438
CIP2A_chr3_108544864_108594438	0/0	t0006	1349	10	0	0	8	0	2	copy fasta	CIP2A	chr3	108544864	108594438
CIP2A_chr3_108544864_108594438	0/0	t0007	1349	5	4	1	0	0	0	copy fasta	CIP2A	chr3	108544864	108594438
CIP2A_chr3_108544864_108594438	0/0	t0008	1349	2	2	0	0	0	0	copy fasta	CIP2A	chr3	108544864	108594438
CIP2A_chr3_108544864_108594438	0/0	t0009	1349	1	0	0	1	0	0	copy fasta	CIP2A	chr3	108544864	108594438
CIP2A_chr3_108544864_108594438	0/0	t0010	1349	1	1	0	0	0	0	copy fasta	CIP2A	chr3	108544864	108594438
CIPC_chr14_77093258_77122287	0/1	t0001	3125	152	15	37	75	5	19	copy fasta	CIPC	chr14	77093258	77122287
CIPC_chr14_77093258_77122287	0/0	t0002	3127	103	16	24	50	6	7	copy fasta	CIPC	chr14	77093258	77122287
CIPC_chr14_77093258_77122287	0/0	t0003	3128	29	2	0	26	0	1	copy fasta	CIPC	chr14	77093258	77122287
CIPC_chr14_77093258_77122287	0/0	t0004	3125	24	4	0	16	0	4	copy fasta	CIPC	chr14	77093258	77122287
CIPC_chr14_77093258_77122287	0/0	t0005	3126	16	16	0	0	0	0	copy fasta	CIPC	chr14	77093258	77122287
CIPC_chr14_77093258_77122287	0/0	t0006	3125	15	3	5	0	2	5	copy fasta	CIPC	chr14	77093258	77122287
CIPC_chr14_77093258_77122287	0/0	t0007	3125	11	10	1	0	0	0	copy fasta	CIPC	chr14	77093258	77122287
CIPC_chr14_77093258_77122287	0/0	t0008	3125	6	0	0	6	0	0	copy fasta	CIPC	chr14	77093258	77122287
CIPC_chr14_77093258_77122287	0/0	t0009	3126	6	6	0	0	0	0	copy fasta	CIPC	chr14	77093258	77122287
CIPC_chr14_77093258_77122287	0/0	t0010	3128	6	0	3	1	1	1	copy fasta	CIPC	chr14	77093258	77122287
CIPC_chr14_77093258_77122287	0/0	t0011	3124	6	0	0	6	0	0	copy fasta	CIPC	chr14	77093258	77122287
CIPC_chr14_77093258_77122287	0/0	t0012	3125	5	0	0	5	0	0	copy fasta	CIPC	chr14	77093258	77122287
CIPC_chr14_77093258_77122287	0/0	t0013	3127	5	0	1	0	0	4	copy fasta	CIPC	chr14	77093258	77122287
CIPC_chr14_77093258_77122287	0/0	t0014	3126	4	4	0	0	0	0	copy fasta	CIPC	chr14	77093258	77122287
CIPC_chr14_77093258_77122287	1/0	t0015	3126	4	3	0	0	0	0	copy fasta	CIPC	chr14	77093258	77122287
CIPC_chr14_77093258_77122287	0/0	t0016	3125	4	0	0	4	0	0	copy fasta	CIPC	chr14	77093258	77122287
CIPC_chr14_77093258_77122287	0/0	t0017	3127	3	2	1	0	0	0	copy fasta	CIPC	chr14	77093258	77122287
CIPC_chr14_77093258_77122287	0/0	t0018	3124	2	2	0	0	0	0	copy fasta	CIPC	chr14	77093258	77122287
CIPC_chr14_77093258_77122287	0/0	t0019	3125	2	2	0	0	0	0	copy fasta	CIPC	chr14	77093258	77122287
CIPC_chr14_77093258_77122287	0/0	t0020	3125	2	0	0	2	0	0	copy fasta	CIPC	chr14	77093258	77122287
CIPC_chr14_77093258_77122287	0/0	t0021	3126	2	0	2	0	0	0	copy fasta	CIPC	chr14	77093258	77122287
CIPC_chr14_77093258_77122287	0/0	t0022	3127	2	0	0	2	0	0	copy fasta	CIPC	chr14	77093258	77122287
CIPC_chr14_77093258_77122287	0/0	t0023	3127	2	0	2	0	0	0	copy fasta	CIPC	chr14	77093258	77122287
CIPC_chr14_77093258_77122287	0/0	t0024	3127	1	1	0	0	0	0	copy fasta	CIPC	chr14	77093258	77122287
CIPC_chr14_77093258_77122287	0/0	t0025	3081	1	1	0	0	0	0	copy fasta	CIPC	chr14	77093258	77122287
CIPC_chr14_77093258_77122287	0/0	t0026	3126	1	1	0	0	0	0	copy fasta	CIPC	chr14	77093258	77122287
CIPC_chr14_77093258_77122287	0/0	t0027	3126	1	1	0	0	0	0	copy fasta	CIPC	chr14	77093258	77122287
CIPC_chr14_77093258_77122287	0/0	t0028	3125	1	1	0	0	0	0	copy fasta	CIPC	chr14	77093258	77122287
CIPC_chr14_77093258_77122287	0/0	t0029	3126	1	0	0	0	0	1	copy fasta	CIPC	chr14	77093258	77122287
CIPC_chr14_77093258_77122287	0/0	t0030	3125	1	0	0	1	0	0	copy fasta	CIPC	chr14	77093258	77122287
CIPC_chr14_77093258_77122287	0/0	t0031	3126	1	1	0	0	0	0	copy fasta	CIPC	chr14	77093258	77122287
CIPC_chr14_77093258_77122287	0/0	t0032	3128	1	0	1	0	0	0	copy fasta	CIPC	chr14	77093258	77122287
CIPC_chr14_77093258_77122287	0/0	t0033	3125	1	1	0	0	0	0	copy fasta	CIPC	chr14	77093258	77122287
CIPC_chr14_77093258_77122287	0/0	t0034	3126	1	0	0	1	0	0	copy fasta	CIPC	chr14	77093258	77122287
CIPC_chr14_77093258_77122287	0/0	t0035	3124	1	0	0	1	0	0	copy fasta	CIPC	chr14	77093258	77122287
CIPC_chr14_77093258_77122287	0/0	t0036	3125	1	0	1	0	0	0	copy fasta	CIPC	chr14	77093258	77122287
CIPC_chr14_77093258_77122287	0/0	t0037	3124	1	1	0	0	0	0	copy fasta	CIPC	chr14	77093258	77122287
CIPC_chr14_77093258_77122287	0/0	t0038	3125	1	1	0	0	0	0	copy fasta	CIPC	chr14	77093258	77122287
CIR1_chr2_174343022_174400712	0/0	t0001	566	180	17	42	82	12	27	copy fasta	CIR1	chr2	174343022	174400712
CIR1_chr2_174343022_174400712	1/1	t0002	566	133	51	15	48	2	15	copy fasta	CIR1	chr2	174343022	174400712
CIR1_chr2_174343022_174400712	0/0	t0003	566	17	15	1	1	0	0	copy fasta	CIR1	chr2	174343022	174400712
CIR1_chr2_174343022_174400712	0/0	t0004	566	7	0	6	0	0	1	copy fasta	CIR1	chr2	174343022	174400712
CIR1_chr2_174343022_174400712	0/0	t0005	566	5	5	0	0	0	0	copy fasta	CIR1	chr2	174343022	174400712