JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CIR1_chr2_174343022_174400712	0/0	t0006	566	2	0	0	0	0	2	copy fasta	CIR1	chr2	174343022	174400712
CIR1_chr2_174343022_174400712	0/0	t0007	566	2	0	0	2	0	0	copy fasta	CIR1	chr2	174343022	174400712
CIR1_chr2_174343022_174400712	0/0	t0008	566	1	0	0	1	0	0	copy fasta	CIR1	chr2	174343022	174400712
CIR1_chr2_174343022_174400712	0/0	t0009	566	1	0	0	0	0	1	copy fasta	CIR1	chr2	174343022	174400712
CIRBP_chr19_1264332_1279810	0/1	t0001	2453	187	49	52	51	11	23	copy fasta	CIRBP	chr19	1264332	1279810
CIRBP_chr19_1264332_1279810	1/0	t0002	2453	55	17	16	8	3	10	copy fasta	CIRBP	chr19	1264332	1279810
CIRBP_chr19_1264332_1279810	0/0	t0003	2453	6	4	0	0	0	2	copy fasta	CIRBP	chr19	1264332	1279810
CIRBP_chr19_1264332_1279810	0/0	t0004	2453	4	4	0	0	0	0	copy fasta	CIRBP	chr19	1264332	1279810
CIRBP_chr19_1264332_1279810	0/0	t0005	2455	4	4	0	0	0	0	copy fasta	CIRBP	chr19	1264332	1279810
CIRBP_chr19_1264332_1279810	0/0	t0006	2453	3	0	0	3	0	0	copy fasta	CIRBP	chr19	1264332	1279810
CIRBP_chr19_1264332_1279810	0/0	t0007	2453	3	3	0	0	0	0	copy fasta	CIRBP	chr19	1264332	1279810
CIRBP_chr19_1264332_1279810	0/0	t0008	2449	3	3	0	0	0	0	copy fasta	CIRBP	chr19	1264332	1279810
CIRBP_chr19_1264332_1279810	0/0	t0009	2449	2	2	0	0	0	0	copy fasta	CIRBP	chr19	1264332	1279810
CIRBP_chr19_1264332_1279810	0/0	t0010	2441	1	0	1	0	0	0	copy fasta	CIRBP	chr19	1264332	1279810
CIRBP_chr19_1264332_1279810	0/0	t0011	2453	1	1	0	0	0	0	copy fasta	CIRBP	chr19	1264332	1279810
CIRBP_chr19_1264332_1279810	0/0	t0012	2453	1	1	0	0	0	0	copy fasta	CIRBP	chr19	1264332	1279810
CIRBP_chr19_1264332_1279810	0/0	t0013	2453	1	0	0	0	1	0	copy fasta	CIRBP	chr19	1264332	1279810
CIRBP_chr19_1264332_1279810	0/0	t0014	2453	1	0	0	1	0	0	copy fasta	CIRBP	chr19	1264332	1279810
CIRBP_chr19_1264332_1279810	0/0	t0015	2453	1	0	0	1	0	0	copy fasta	CIRBP	chr19	1264332	1279810
CIRBP_chr19_1264332_1279810	0/0	t0016	2453	1	1	0	0	0	0	copy fasta	CIRBP	chr19	1264332	1279810
CIRBP_chr19_1264332_1279810	0/0	t0017	2453	1	0	0	1	0	0	copy fasta	CIRBP	chr19	1264332	1279810
CIRBP_chr19_1264332_1279810	0/0	t0018	2453	1	0	0	1	0	0	copy fasta	CIRBP	chr19	1264332	1279810
CIRBP_chr19_1264332_1279810	0/0	t0019	2455	1	1	0	0	0	0	copy fasta	CIRBP	chr19	1264332	1279810
CIRBP_chr19_1264332_1279810	0/0	t0020	2453	1	0	1	0	0	0	copy fasta	CIRBP	chr19	1264332	1279810
CIRBP_chr19_1264332_1279810	0/0	t0021	2453	1	0	0	0	1	0	copy fasta	CIRBP	chr19	1264332	1279810
CIRBP_chr19_1264332_1279810	0/0	t0022	2453	1	0	0	0	0	1	copy fasta	CIRBP	chr19	1264332	1279810
CIROP_chr14_23094062_23109989	1/1	t0001	290	343	61	55	177	6	42	copy fasta	CIROP	chr14	23094062	23109989
CIROP_chr14_23094062_23109989	0/0	t0002	290	81	31	8	40	1	1	copy fasta	CIROP	chr14	23094062	23109989
CIROP_chr14_23094062_23109989	0/0	t0003	290	25	8	11	0	1	5	copy fasta	CIROP	chr14	23094062	23109989
CIROP_chr14_23094062_23109989	0/0	t0004	290	1	0	0	1	0	0	copy fasta	CIROP	chr14	23094062	23109989
CISD1_chr10_58264162_58294586	0/1	t0001	2048	190	26	41	91	6	25	copy fasta	CISD1	chr10	58264162	58294586
CISD1_chr10_58264162_58294586	0/0	t0002	2047	141	31	21	71	2	16	copy fasta	CISD1	chr10	58264162	58294586
CISD1_chr10_58264162_58294586	0/0	t0003	2047	17	14	1	0	0	2	copy fasta	CISD1	chr10	58264162	58294586
CISD1_chr10_58264162_58294586	0/0	t0004	2046	9	6	3	0	0	0	copy fasta	CISD1	chr10	58264162	58294586
CISD1_chr10_58264162_58294586	0/0	t0005	2049	8	1	1	4	0	2	copy fasta	CISD1	chr10	58264162	58294586
CISD1_chr10_58264162_58294586	0/0	t0006	2048	8	7	1	0	0	0	copy fasta	CISD1	chr10	58264162	58294586
CISD1_chr10_58264162_58294586	0/0	t0007	2044	5	5	0	0	0	0	copy fasta	CISD1	chr10	58264162	58294586
CISD1_chr10_58264162_58294586	0/0	t0008	2048	2	2	0	0	0	0	copy fasta	CISD1	chr10	58264162	58294586
CISD1_chr10_58264162_58294586	0/0	t0009	2048	1	0	0	1	0	0	copy fasta	CISD1	chr10	58264162	58294586
CISD1_chr10_58264162_58294586	0/0	t0010	2048	1	0	0	0	0	1	copy fasta	CISD1	chr10	58264162	58294586
CISD1_chr10_58264162_58294586	0/0	t0011	2048	1	0	0	1	0	0	copy fasta	CISD1	chr10	58264162	58294586
CISD1_chr10_58264162_58294586	1/0	t0012	2049	1	0	0	0	0	0	copy fasta	CISD1	chr10	58264162	58294586
CISD1_chr10_58264162_58294586	0/0	t0013	2047	1	0	0	1	0	0	copy fasta	CISD1	chr10	58264162	58294586
CISD1_chr10_58264162_58294586	0/0	t0014	2047	1	0	0	1	0	0	copy fasta	CISD1	chr10	58264162	58294586
CISD2_chr4_102863992_102897807	1/0	t0001	5471	103	10	18	48	8	18	copy fasta	CISD2	chr4	102863992	102897807
CISD2_chr4_102863992_102897807	0/0	t0002	5484	82	16	14	35	3	14	copy fasta	CISD2	chr4	102863992	102897807
CISD2_chr4_102863992_102897807	0/0	t0003	5485	22	3	0	17	0	2	copy fasta	CISD2	chr4	102863992	102897807
CISD2_chr4_102863992_102897807	0/0	t0004	5490	16	5	1	9	1	0	copy fasta	CISD2	chr4	102863992	102897807
CISD2_chr4_102863992_102897807	0/0	t0005	5486	14	12	2	0	0	0	copy fasta	CISD2	chr4	102863992	102897807
CISD2_chr4_102863992_102897807	0/0	t0006	5490	13	0	9	3	0	1	copy fasta	CISD2	chr4	102863992	102897807