JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CISD2_chr4_102863992_102897807	0/0	t0007	5485	12	12	0	0	0	0	copy fasta	CISD2	chr4	102863992	102897807
CISD2_chr4_102863992_102897807	0/0	t0008	5492	12	0	0	12	0	0	copy fasta	CISD2	chr4	102863992	102897807
CISD2_chr4_102863992_102897807	0/0	t0009	5050	8	7	1	0	0	0	copy fasta	CISD2	chr4	102863992	102897807
CISD2_chr4_102863992_102897807	0/0	t0010	5484	8	0	3	5	0	0	copy fasta	CISD2	chr4	102863992	102897807
CISD2_chr4_102863992_102897807	0/0	t0011	5473	7	0	0	6	0	1	copy fasta	CISD2	chr4	102863992	102897807
CISD2_chr4_102863992_102897807	0/0	t0012	5486	6	2	3	1	0	0	copy fasta	CISD2	chr4	102863992	102897807
CISD2_chr4_102863992_102897807	0/0	t0013	5486	4	2	0	2	0	0	copy fasta	CISD2	chr4	102863992	102897807
CISD2_chr4_102863992_102897807	0/0	t0014	5482	3	1	0	2	0	0	copy fasta	CISD2	chr4	102863992	102897807
CISD2_chr4_102863992_102897807	0/0	t0015	5471	2	0	0	2	0	0	copy fasta	CISD2	chr4	102863992	102897807
CISD2_chr4_102863992_102897807	0/0	t0016	5484	2	2	0	0	0	0	copy fasta	CISD2	chr4	102863992	102897807
CISD2_chr4_102863992_102897807	0/0	t0017	5487	2	1	1	0	0	0	copy fasta	CISD2	chr4	102863992	102897807
CISD2_chr4_102863992_102897807	0/0	t0018	5492	2	0	0	0	1	1	copy fasta	CISD2	chr4	102863992	102897807
CISD2_chr4_102863992_102897807	0/0	t0019	5469	1	1	0	0	0	0	copy fasta	CISD2	chr4	102863992	102897807
CISD2_chr4_102863992_102897807	0/0	t0020	5469	1	1	0	0	0	0	copy fasta	CISD2	chr4	102863992	102897807
CISD2_chr4_102863992_102897807	0/0	t0021	5469	1	0	0	1	0	0	copy fasta	CISD2	chr4	102863992	102897807
CISD2_chr4_102863992_102897807	0/0	t0022	5471	1	0	0	1	0	0	copy fasta	CISD2	chr4	102863992	102897807
CISD2_chr4_102863992_102897807	0/0	t0023	5471	1	0	0	1	0	0	copy fasta	CISD2	chr4	102863992	102897807
CISD2_chr4_102863992_102897807	0/0	t0024	5471	1	0	0	1	0	0	copy fasta	CISD2	chr4	102863992	102897807
CISD2_chr4_102863992_102897807	0/0	t0025	5484	1	0	0	0	0	1	copy fasta	CISD2	chr4	102863992	102897807
CISD2_chr4_102863992_102897807	0/0	t0026	5050	1	1	0	0	0	0	copy fasta	CISD2	chr4	102863992	102897807
CISD2_chr4_102863992_102897807	0/0	t0027	5490	1	1	0	0	0	0	copy fasta	CISD2	chr4	102863992	102897807
CISD2_chr4_102863992_102897807	0/0	t0028	5485	1	0	0	1	0	0	copy fasta	CISD2	chr4	102863992	102897807
CISD2_chr4_102863992_102897807	0/0	t0029	5486	1	0	1	0	0	0	copy fasta	CISD2	chr4	102863992	102897807
CISD2_chr4_102863992_102897807	0/0	t0030	5050	1	1	0	0	0	0	copy fasta	CISD2	chr4	102863992	102897807
CISD2_chr4_102863992_102897807	0/0	t0031	5484	1	1	0	0	0	0	copy fasta	CISD2	chr4	102863992	102897807
CISD2_chr4_102863992_102897807	0/0	t0032	5484	1	1	0	0	0	0	copy fasta	CISD2	chr4	102863992	102897807
CISD2_chr4_102863992_102897807	0/0	t0033	5483	1	0	0	1	0	0	copy fasta	CISD2	chr4	102863992	102897807
CISD2_chr4_102863992_102897807	0/0	t0034	5484	1	0	1	0	0	0	copy fasta	CISD2	chr4	102863992	102897807
CISD2_chr4_102863992_102897807	0/0	t0035	5485	1	1	0	0	0	0	copy fasta	CISD2	chr4	102863992	102897807
CISD2_chr4_102863992_102897807	0/0	t0036	5484	1	1	0	0	0	0	copy fasta	CISD2	chr4	102863992	102897807
CISD2_chr4_102863992_102897807	0/0	t0037	5473	1	1	0	0	0	0	copy fasta	CISD2	chr4	102863992	102897807
CISD2_chr4_102863992_102897807	0/0	t0038	5487	1	1	0	0	0	0	copy fasta	CISD2	chr4	102863992	102897807
CISD2_chr4_102863992_102897807	0/0	t0039	5488	1	0	0	0	1	0	copy fasta	CISD2	chr4	102863992	102897807
CISD2_chr4_102863992_102897807	0/1	t0040	5488	1	0	0	0	0	0	copy fasta	CISD2	chr4	102863992	102897807
CISD2_chr4_102863992_102897807	0/0	t0041	5492	1	1	0	0	0	0	copy fasta	CISD2	chr4	102863992	102897807
CISD2_chr4_102863992_102897807	0/0	t0042	5490	1	1	0	0	0	0	copy fasta	CISD2	chr4	102863992	102897807
CISD2_chr4_102863992_102897807	0/0	t0043	5491	1	0	0	1	0	0	copy fasta	CISD2	chr4	102863992	102897807
CISD2_chr4_102863992_102897807	0/0	t0044	5490	1	0	1	0	0	0	copy fasta	CISD2	chr4	102863992	102897807
CISD2_chr4_102863992_102897807	0/0	t0045	5490	1	0	1	0	0	0	copy fasta	CISD2	chr4	102863992	102897807
CISD2_chr4_102863992_102897807	0/0	t0046	5490	1	1	0	0	0	0	copy fasta	CISD2	chr4	102863992	102897807
CISD2_chr4_102863992_102897807	0/0	t0047	5489	1	1	0	0	0	0	copy fasta	CISD2	chr4	102863992	102897807
CISD2_chr4_102863992_102897807	0/0	t0048	5488	1	1	0	0	0	0	copy fasta	CISD2	chr4	102863992	102897807
CISD2_chr4_102863992_102897807	0/0	t0049	5492	1	0	0	1	0	0	copy fasta	CISD2	chr4	102863992	102897807
CISD2_chr4_102863992_102897807	0/0	t0050	5493	1	0	0	1	0	0	copy fasta	CISD2	chr4	102863992	102897807
CISD2_chr4_102863992_102897807	0/0	t0051	5491	1	0	0	1	0	0	copy fasta	CISD2	chr4	102863992	102897807
CISD2_chr4_102863992_102897807	0/0	t0052	5493	1	0	0	0	0	1	copy fasta	CISD2	chr4	102863992	102897807
CISD2_chr4_102863992_102897807	0/0	t0053	5490	1	1	0	0	0	0	copy fasta	CISD2	chr4	102863992	102897807
CISD2_chr4_102863992_102897807	0/0	t0054	5484	1	0	0	0	0	1	copy fasta	CISD2	chr4	102863992	102897807
CISD3_chr17_38725341_38740605	0/1	t0001	2169	224	43	39	117	6	18	copy fasta	CISD3	chr17	38725341	38740605
CISD3_chr17_38725341_38740605	0/0	t0002	2171	71	6	22	24	4	15	copy fasta	CISD3	chr17	38725341	38740605