Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ABCA12_chr2_214926542_215143626	0/0	t0014	1512	2	2	0	0	0	0	copy fasta	ABCA12	chr2	214926542	215143626
ABCA12_chr2_214926542_215143626	0/0	t0015	1512	2	2	0	0	0	0	copy fasta	ABCA12	chr2	214926542	215143626
ABCA12_chr2_214926542_215143626	0/0	t0016	1512	2	2	0	0	0	0	copy fasta	ABCA12	chr2	214926542	215143626
ABCA12_chr2_214926542_215143626	0/0	t0017	1514	1	1	0	0	0	0	copy fasta	ABCA12	chr2	214926542	215143626
ABCA12_chr2_214926542_215143626	0/0	t0018	1510	1	1	0	0	0	0	copy fasta	ABCA12	chr2	214926542	215143626
ABCA12_chr2_214926542_215143626	0/0	t0019	1511	1	1	0	0	0	0	copy fasta	ABCA12	chr2	214926542	215143626
ABCA12_chr2_214926542_215143626	0/0	t0020	1511	1	0	0	1	0	0	copy fasta	ABCA12	chr2	214926542	215143626
ABCA12_chr2_214926542_215143626	0/0	t0021	1512	1	1	0	0	0	0	copy fasta	ABCA12	chr2	214926542	215143626
ABCA12_chr2_214926542_215143626	0/0	t0022	1515	1	0	0	0	0	1	copy fasta	ABCA12	chr2	214926542	215143626
ABCA12_chr2_214926542_215143626	0/0	t0023	1551	1	0	0	1	0	0	copy fasta	ABCA12	chr2	214926542	215143626
ABCA12_chr2_214926542_215143626	0/0	t0024	1512	1	0	0	0	0	1	copy fasta	ABCA12	chr2	214926542	215143626
ABCA12_chr2_214926542_215143626	0/0	t0025	1512	1	1	0	0	0	0	copy fasta	ABCA12	chr2	214926542	215143626
ABCA12_chr2_214926542_215143626	0/0	t0026	1513	1	1	0	0	0	0	copy fasta	ABCA12	chr2	214926542	215143626
ABCA13_chr7_48166458_48652497	0/0	t0001	2012	56	22	7	23	2	2	copy fasta	ABCA13	chr7	48166458	48652497
ABCA13_chr7_48166458_48652497	0/1	t0002	2012	33	7	8	10	3	4	copy fasta	ABCA13	chr7	48166458	48652497
ABCA13_chr7_48166458_48652497	0/0	t0003	2012	32	7	5	19	0	1	copy fasta	ABCA13	chr7	48166458	48652497
ABCA13_chr7_48166458_48652497	0/0	t0004	2015	24	9	7	7	0	1	copy fasta	ABCA13	chr7	48166458	48652497
ABCA13_chr7_48166458_48652497	1/0	t0005	2012	16	11	2	0	0	2	copy fasta	ABCA13	chr7	48166458	48652497
ABCA13_chr7_48166458_48652497	0/0	t0006	2014	6	2	1	0	1	2	copy fasta	ABCA13	chr7	48166458	48652497
ABCA13_chr7_48166458_48652497	0/0	t0007	2013	3	3	0	0	0	0	copy fasta	ABCA13	chr7	48166458	48652497
ABCA13_chr7_48166458_48652497	0/0	t0008	2012	2	2	0	0	0	0	copy fasta	ABCA13	chr7	48166458	48652497
ABCA13_chr7_48166458_48652497	0/0	t0009	2013	2	2	0	0	0	0	copy fasta	ABCA13	chr7	48166458	48652497
ABCA13_chr7_48166458_48652497	0/0	t0010	2012	1	1	0	0	0	0	copy fasta	ABCA13	chr7	48166458	48652497
ABCA13_chr7_48166458_48652497	0/0	t0011	2012	1	0	0	1	0	0	copy fasta	ABCA13	chr7	48166458	48652497
ABCA13_chr7_48166458_48652497	0/0	t0012	2012	1	1	0	0	0	0	copy fasta	ABCA13	chr7	48166458	48652497
ABCA13_chr7_48166458_48652497	0/0	t0013	2012	1	1	0	0	0	0	copy fasta	ABCA13	chr7	48166458	48652497
ABCA1_chr9_104776006_104933155	0/1	t0001	3623	59	29	16	2	2	9	copy fasta	ABCA1	chr9	104776006	104933155
ABCA1_chr9_104776006_104933155	0/0	t0002	3619	53	12	10	30	0	1	copy fasta	ABCA1	chr9	104776006	104933155
ABCA1_chr9_104776006_104933155	0/0	t0003	3622	31	3	8	16	1	3	copy fasta	ABCA1	chr9	104776006	104933155
ABCA1_chr9_104776006_104933155	1/0	t0004	3623	24	4	6	6	2	5	copy fasta	ABCA1	chr9	104776006	104933155
ABCA1_chr9_104776006_104933155	0/0	t0005	3624	17	15	0	2	0	0	copy fasta	ABCA1	chr9	104776006	104933155
ABCA1_chr9_104776006_104933155	0/0	t0006	3623	16	0	2	10	0	4	copy fasta	ABCA1	chr9	104776006	104933155
ABCA1_chr9_104776006_104933155	0/0	t0007	3623	15	5	4	6	0	0	copy fasta	ABCA1	chr9	104776006	104933155
ABCA1_chr9_104776006_104933155	0/0	t0008	3622	10	10	0	0	0	0	copy fasta	ABCA1	chr9	104776006	104933155
ABCA1_chr9_104776006_104933155	0/0	t0009	3624	9	0	3	2	0	4	copy fasta	ABCA1	chr9	104776006	104933155
ABCA1_chr9_104776006_104933155	0/0	t0010	3620	9	0	5	4	0	0	copy fasta	ABCA1	chr9	104776006	104933155
ABCA1_chr9_104776006_104933155	0/0	t0011	3624	6	0	1	4	0	1	copy fasta	ABCA1	chr9	104776006	104933155
ABCA1_chr9_104776006_104933155	0/0	t0012	3624	5	0	0	5	0	0	copy fasta	ABCA1	chr9	104776006	104933155
ABCA1_chr9_104776006_104933155	0/0	t0013	3619	4	4	0	0	0	0	copy fasta	ABCA1	chr9	104776006	104933155
ABCA1_chr9_104776006_104933155	0/0	t0014	3622	4	0	0	4	0	0	copy fasta	ABCA1	chr9	104776006	104933155
ABCA1_chr9_104776006_104933155	0/0	t0015	3623	3	2	1	0	0	0	copy fasta	ABCA1	chr9	104776006	104933155
ABCA1_chr9_104776006_104933155	0/0	t0016	3622	3	0	1	1	1	0	copy fasta	ABCA1	chr9	104776006	104933155
ABCA1_chr9_104776006_104933155	0/0	t0017	3622	3	0	0	0	1	2	copy fasta	ABCA1	chr9	104776006	104933155
ABCA1_chr9_104776006_104933155	0/0	t0018	3623	3	0	0	3	0	0	copy fasta	ABCA1	chr9	104776006	104933155
ABCA1_chr9_104776006_104933155	0/0	t0019	3624	2	2	0	0	0	0	copy fasta	ABCA1	chr9	104776006	104933155
ABCA1_chr9_104776006_104933155	0/0	t0020	3623	2	0	0	1	0	1	copy fasta	ABCA1	chr9	104776006	104933155
ABCA1_chr9_104776006_104933155	0/0	t0021	3619	2	2	0	0	0	0	copy fasta	ABCA1	chr9	104776006	104933155
ABCA1_chr9_104776006_104933155	0/0	t0022	3623	2	0	0	2	0	0	copy fasta	ABCA1	chr9	104776006	104933155
ABCA1_chr9_104776006_104933155	0/0	t0023	3622	2	0	0	0	0	2	copy fasta	ABCA1	chr9	104776006	104933155
ABCA1_chr9_104776006_104933155	0/0	t0024	3619	2	2	0	0	0	0	copy fasta	ABCA1	chr9	104776006	104933155