Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ADCY1_chr7_45569368_45728116	0/0	t0029	9298	2	0	0	2	0	0	copy fasta	ADCY1	chr7	45569368	45728116
ADCY1_chr7_45569368_45728116	0/0	t0030	9305	1	1	0	0	0	0	copy fasta	ADCY1	chr7	45569368	45728116
ADCY1_chr7_45569368_45728116	0/0	t0031	9305	1	1	0	0	0	0	copy fasta	ADCY1	chr7	45569368	45728116
ADCY1_chr7_45569368_45728116	0/0	t0032	9290	1	0	0	1	0	0	copy fasta	ADCY1	chr7	45569368	45728116
ADCY1_chr7_45569368_45728116	0/0	t0033	9289	1	0	0	1	0	0	copy fasta	ADCY1	chr7	45569368	45728116
ADCY1_chr7_45569368_45728116	0/0	t0034	9289	1	0	0	1	0	0	copy fasta	ADCY1	chr7	45569368	45728116
ADCY1_chr7_45569368_45728116	0/0	t0035	9287	1	0	0	1	0	0	copy fasta	ADCY1	chr7	45569368	45728116
ADCY1_chr7_45569368_45728116	0/0	t0036	9287	1	0	0	1	0	0	copy fasta	ADCY1	chr7	45569368	45728116
ADCY1_chr7_45569368_45728116	0/0	t0037	9287	1	0	0	1	0	0	copy fasta	ADCY1	chr7	45569368	45728116
ADCY1_chr7_45569368_45728116	0/0	t0038	9286	1	0	0	1	0	0	copy fasta	ADCY1	chr7	45569368	45728116
ADCY1_chr7_45569368_45728116	0/0	t0039	9277	1	1	0	0	0	0	copy fasta	ADCY1	chr7	45569368	45728116
ADCY1_chr7_45569368_45728116	0/0	t0040	9277	1	1	0	0	0	0	copy fasta	ADCY1	chr7	45569368	45728116
ADCY1_chr7_45569368_45728116	0/0	t0041	9297	1	1	0	0	0	0	copy fasta	ADCY1	chr7	45569368	45728116
ADCY1_chr7_45569368_45728116	0/0	t0042	9297	1	1	0	0	0	0	copy fasta	ADCY1	chr7	45569368	45728116
ADCY1_chr7_45569368_45728116	0/0	t0043	9298	1	1	0	0	0	0	copy fasta	ADCY1	chr7	45569368	45728116
ADCY1_chr7_45569368_45728116	0/0	t0044	9298	1	0	1	0	0	0	copy fasta	ADCY1	chr7	45569368	45728116
ADCY1_chr7_45569368_45728116	0/0	t0045	9297	1	1	0	0	0	0	copy fasta	ADCY1	chr7	45569368	45728116
ADCY1_chr7_45569368_45728116	0/0	t0046	9297	1	1	0	0	0	0	copy fasta	ADCY1	chr7	45569368	45728116
ADCY1_chr7_45569368_45728116	0/0	t0047	9298	1	0	0	1	0	0	copy fasta	ADCY1	chr7	45569368	45728116
ADCY1_chr7_45569368_45728116	0/0	t0048	9297	1	0	0	0	0	1	copy fasta	ADCY1	chr7	45569368	45728116
ADCY1_chr7_45569368_45728116	0/0	t0049	9297	1	0	0	1	0	0	copy fasta	ADCY1	chr7	45569368	45728116
ADCY1_chr7_45569368_45728116	0/0	t0050	9297	1	0	0	1	0	0	copy fasta	ADCY1	chr7	45569368	45728116
ADCY1_chr7_45569368_45728116	0/0	t0051	9298	1	0	0	0	0	1	copy fasta	ADCY1	chr7	45569368	45728116
ADCY1_chr7_45569368_45728116	0/0	t0052	9298	1	0	0	0	0	1	copy fasta	ADCY1	chr7	45569368	45728116
ADCY1_chr7_45569368_45728116	0/0	t0053	9298	1	1	0	0	0	0	copy fasta	ADCY1	chr7	45569368	45728116
ADCY1_chr7_45569368_45728116	0/0	t0054	9298	1	0	0	1	0	0	copy fasta	ADCY1	chr7	45569368	45728116
ADCY1_chr7_45569368_45728116	0/0	t0055	9297	1	0	0	1	0	0	copy fasta	ADCY1	chr7	45569368	45728116
ADCY1_chr7_45569368_45728116	0/0	t0056	9298	1	0	0	0	0	1	copy fasta	ADCY1	chr7	45569368	45728116
ADCY1_chr7_45569368_45728116	0/0	t0057	9298	1	0	0	0	0	1	copy fasta	ADCY1	chr7	45569368	45728116
ADCY1_chr7_45569368_45728116	0/0	t0058	9298	1	0	0	0	0	1	copy fasta	ADCY1	chr7	45569368	45728116
ADCY1_chr7_45569368_45728116	0/0	t0059	9298	1	0	1	0	0	0	copy fasta	ADCY1	chr7	45569368	45728116
ADCY1_chr7_45569368_45728116	0/0	t0060	9297	1	1	0	0	0	0	copy fasta	ADCY1	chr7	45569368	45728116
ADCY1_chr7_45569368_45728116	0/0	t0061	9297	1	0	0	1	0	0	copy fasta	ADCY1	chr7	45569368	45728116
ADCY1_chr7_45569368_45728116	0/0	t0062	9297	1	0	0	1	0	0	copy fasta	ADCY1	chr7	45569368	45728116
ADCY1_chr7_45569368_45728116	0/0	t0063	9298	1	1	0	0	0	0	copy fasta	ADCY1	chr7	45569368	45728116
ADCY1_chr7_45569368_45728116	0/0	t0064	9298	1	0	0	0	1	0	copy fasta	ADCY1	chr7	45569368	45728116
ADCY1_chr7_45569368_45728116	0/0	t0065	9298	1	0	1	0	0	0	copy fasta	ADCY1	chr7	45569368	45728116
ADCY1_chr7_45569368_45728116	0/0	t0066	9301	1	1	0	0	0	0	copy fasta	ADCY1	chr7	45569368	45728116
ADCY1_chr7_45569368_45728116	0/0	t0067	9298	1	0	0	1	0	0	copy fasta	ADCY1	chr7	45569368	45728116
ADCY1_chr7_45569368_45728116	0/0	t0068	9297	1	1	0	0	0	0	copy fasta	ADCY1	chr7	45569368	45728116
ADCY1_chr7_45569368_45728116	0/0	t0069	9298	1	1	0	0	0	0	copy fasta	ADCY1	chr7	45569368	45728116
ADCY1_chr7_45569368_45728116	0/0	t0070	9298	1	1	0	0	0	0	copy fasta	ADCY1	chr7	45569368	45728116
ADCY1_chr7_45569368_45728116	0/0	t0071	9298	1	1	0	0	0	0	copy fasta	ADCY1	chr7	45569368	45728116
ADCY1_chr7_45569368_45728116	0/0	t0072	9298	1	0	0	1	0	0	copy fasta	ADCY1	chr7	45569368	45728116
ADCY1_chr7_45569368_45728116	0/0	t0073	9298	1	0	0	1	0	0	copy fasta	ADCY1	chr7	45569368	45728116
ADCY1_chr7_45569368_45728116	0/0	t0074	9298	1	0	0	1	0	0	copy fasta	ADCY1	chr7	45569368	45728116
ADCY1_chr7_45569368_45728116	0/0	t0075	9297	1	1	0	0	0	0	copy fasta	ADCY1	chr7	45569368	45728116
ADCY1_chr7_45569368_45728116	0/0	t0076	9298	1	0	0	1	0	0	copy fasta	ADCY1	chr7	45569368	45728116
ADCY1_chr7_45569368_45728116	0/0	t0077	9298	1	0	0	0	0	1	copy fasta	ADCY1	chr7	45569368	45728116
ADCY2_chr5_7391138_7835081	0/1	t0001	3369	50	29	15	1	2	2	copy fasta	ADCY2	chr5	7391138	7835081