JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CISD3_chr17_38725341_38740605	0/0	t0003	2170	41	25	3	6	2	5	copy fasta	CISD3	chr17	38725341	38740605
CISD3_chr17_38725341_38740605	0/0	t0004	2171	15	0	0	15	0	0	copy fasta	CISD3	chr17	38725341	38740605
CISD3_chr17_38725341_38740605	0/0	t0005	2170	11	3	0	8	0	0	copy fasta	CISD3	chr17	38725341	38740605
CISD3_chr17_38725341_38740605	0/0	t0006	2170	11	0	0	11	0	0	copy fasta	CISD3	chr17	38725341	38740605
CISD3_chr17_38725341_38740605	0/0	t0007	2170	7	7	0	0	0	0	copy fasta	CISD3	chr17	38725341	38740605
CISD3_chr17_38725341_38740605	0/0	t0008	2169	6	0	6	0	0	0	copy fasta	CISD3	chr17	38725341	38740605
CISD3_chr17_38725341_38740605	0/0	t0009	2170	3	0	2	0	0	1	copy fasta	CISD3	chr17	38725341	38740605
CISD3_chr17_38725341_38740605	0/0	t0010	2170	3	3	0	0	0	0	copy fasta	CISD3	chr17	38725341	38740605
CISD3_chr17_38725341_38740605	0/0	t0011	2169	3	0	0	3	0	0	copy fasta	CISD3	chr17	38725341	38740605
CISD3_chr17_38725341_38740605	0/0	t0012	2170	2	0	1	0	0	1	copy fasta	CISD3	chr17	38725341	38740605
CISD3_chr17_38725341_38740605	0/0	t0013	2171	2	1	1	0	0	0	copy fasta	CISD3	chr17	38725341	38740605
CISD3_chr17_38725341_38740605	0/0	t0014	2170	2	0	0	2	0	0	copy fasta	CISD3	chr17	38725341	38740605
CISD3_chr17_38725341_38740605	0/0	t0015	2169	1	0	0	1	0	0	copy fasta	CISD3	chr17	38725341	38740605
CISD3_chr17_38725341_38740605	0/0	t0016	2170	1	0	0	1	0	0	copy fasta	CISD3	chr17	38725341	38740605
CISD3_chr17_38725341_38740605	0/0	t0017	2170	1	0	1	0	0	0	copy fasta	CISD3	chr17	38725341	38740605
CISD3_chr17_38725341_38740605	0/0	t0018	2170	1	1	0	0	0	0	copy fasta	CISD3	chr17	38725341	38740605
CISD3_chr17_38725341_38740605	0/0	t0019	2169	1	0	0	1	0	0	copy fasta	CISD3	chr17	38725341	38740605
CISD3_chr17_38725341_38740605	0/0	t0020	2169	1	0	0	1	0	0	copy fasta	CISD3	chr17	38725341	38740605
CISD3_chr17_38725341_38740605	0/0	t0021	2169	1	0	0	1	0	0	copy fasta	CISD3	chr17	38725341	38740605
CISD3_chr17_38725341_38740605	0/0	t0022	2171	1	1	0	0	0	0	copy fasta	CISD3	chr17	38725341	38740605
CISD3_chr17_38725341_38740605	0/0	t0023	2171	1	0	0	1	0	0	copy fasta	CISD3	chr17	38725341	38740605
CISD3_chr17_38725341_38740605	0/0	t0024	2169	1	0	1	0	0	0	copy fasta	CISD3	chr17	38725341	38740605
CISH_chr3_50601489_50616774	0/0	t0001	1243	199	43	29	84	9	34	copy fasta	CISH	chr3	50601489	50616774
CISH_chr3_50601489_50616774	1/1	t0002	1243	123	21	25	66	3	6	copy fasta	CISH	chr3	50601489	50616774
CISH_chr3_50601489_50616774	0/0	t0003	1243	10	0	0	10	0	0	copy fasta	CISH	chr3	50601489	50616774
CISH_chr3_50601489_50616774	0/0	t0004	1243	6	6	0	0	0	0	copy fasta	CISH	chr3	50601489	50616774
CISH_chr3_50601489_50616774	0/0	t0005	1243	5	0	0	5	0	0	copy fasta	CISH	chr3	50601489	50616774
CISH_chr3_50601489_50616774	0/0	t0006	1243	4	0	0	4	0	0	copy fasta	CISH	chr3	50601489	50616774
CISH_chr3_50601489_50616774	0/0	t0007	1243	2	0	0	2	0	0	copy fasta	CISH	chr3	50601489	50616774
CISH_chr3_50601489_50616774	0/0	t0008	1243	2	0	2	0	0	0	copy fasta	CISH	chr3	50601489	50616774
CISH_chr3_50601489_50616774	0/0	t0009	1243	2	2	0	0	0	0	copy fasta	CISH	chr3	50601489	50616774
CISH_chr3_50601489_50616774	0/0	t0010	1243	2	2	0	0	0	0	copy fasta	CISH	chr3	50601489	50616774
CISH_chr3_50601489_50616774	0/0	t0011	1243	1	1	0	0	0	0	copy fasta	CISH	chr3	50601489	50616774
CISH_chr3_50601489_50616774	0/0	t0012	1243	1	0	0	1	0	0	copy fasta	CISH	chr3	50601489	50616774
CISH_chr3_50601489_50616774	0/0	t0013	1243	1	1	0	0	0	0	copy fasta	CISH	chr3	50601489	50616774
CISH_chr3_50601489_50616774	0/0	t0014	1243	1	0	0	1	0	0	copy fasta	CISH	chr3	50601489	50616774
CISH_chr3_50601489_50616774	0/0	t0015	1243	1	0	0	1	0	0	copy fasta	CISH	chr3	50601489	50616774
CITED1_chrX_72296646_72310914	1/1	t0001	233	299	71	42	145	7	32	copy fasta	CITED1	chrX	72296646	72310914
CITED1_chrX_72296646_72310914	0/0	t0002	233	3	3	0	0	0	0	copy fasta	CITED1	chrX	72296646	72310914
CITED2_chr6_139366807_139379648	1/0	t0001	1570	175	29	44	74	6	21	copy fasta	CITED2	chr6	139366807	139379648
CITED2_chr6_139366807_139379648	0/1	t0002	1567	62	46	8	0	3	4	copy fasta	CITED2	chr6	139366807	139379648
CITED2_chr6_139366807_139379648	0/0	t0003	1570	36	7	10	4	4	11	copy fasta	CITED2	chr6	139366807	139379648
CITED2_chr6_139366807_139379648	0/0	t0004	1567	7	4	3	0	0	0	copy fasta	CITED2	chr6	139366807	139379648
CITED2_chr6_139366807_139379648	0/0	t0005	1570	5	0	3	0	1	1	copy fasta	CITED2	chr6	139366807	139379648
CITED2_chr6_139366807_139379648	0/0	t0006	1570	5	0	0	5	0	0	copy fasta	CITED2	chr6	139366807	139379648
CITED2_chr6_139366807_139379648	0/0	t0007	1569	4	4	0	0	0	0	copy fasta	CITED2	chr6	139366807	139379648
CITED2_chr6_139366807_139379648	0/0	t0008	1570	3	0	0	3	0	0	copy fasta	CITED2	chr6	139366807	139379648
CITED2_chr6_139366807_139379648	0/0	t0009	1570	3	2	1	0	0	0	copy fasta	CITED2	chr6	139366807	139379648
CITED2_chr6_139366807_139379648	0/0	t0010	1567	3	3	0	0	0	0	copy fasta	CITED2	chr6	139366807	139379648
CITED2_chr6_139366807_139379648	0/0	t0011	1570	3	0	0	3	0	0	copy fasta	CITED2	chr6	139366807	139379648